Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VCANP13611 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC16.76■□□□□ 0.27
VCANP13611 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC16.76■□□□□ 0.27
VCANP13611 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC16.76■□□□□ 0.27
VCANP13611 COX6A1P2-201ENST00000620597 330 ntBASIC16.76■□□□□ 0.27
VCANP13611 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.76■□□□□ 0.27
VCANP13611 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.76■□□□□ 0.27
VCANP13611 AL355312.1-201ENST00000407115 2176 ntBASIC16.76■□□□□ 0.27
VCANP13611 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCANP13611 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.76■□□□□ 0.27
VCANP13611 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.76■□□□□ 0.27
VCANP13611 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCANP13611 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCANP13611 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.76■□□□□ 0.27
VCANP13611 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCANP13611 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.76■□□□□ 0.27
VCANP13611 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
VCANP13611 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
VCANP13611 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
VCANP13611 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC16.75■□□□□ 0.27
VCANP13611 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.75■□□□□ 0.27
VCANP13611 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC16.75■□□□□ 0.27
VCANP13611 RN7SL574P-201ENST00000581512 297 ntBASIC16.75■□□□□ 0.27
VCANP13611 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
VCANP13611 AC074044.1-201ENST00000609673 707 ntBASIC16.75■□□□□ 0.27
VCANP13611 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.75■□□□□ 0.27
VCANP13611 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
VCANP13611 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC16.75■□□□□ 0.27
VCANP13611 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.75■□□□□ 0.27
VCANP13611 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
VCANP13611 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC16.75■□□□□ 0.27
VCANP13611 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC16.75■□□□□ 0.27
VCANP13611 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.75■□□□□ 0.27
VCANP13611 RN7SL596P-201ENST00000582123 288 ntBASIC16.75■□□□□ 0.27
VCANP13611 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC16.75■□□□□ 0.27
VCANP13611 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC16.75■□□□□ 0.27
VCANP13611 AL451050.2-201ENST00000606967 682 ntBASIC16.75■□□□□ 0.27
VCANP13611 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.75■□□□□ 0.27
VCANP13611 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.75■□□□□ 0.27
VCANP13611 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.75■□□□□ 0.27
VCANP13611 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.75■□□□□ 0.27
VCANP13611 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.75■□□□□ 0.27
VCANP13611 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.75■□□□□ 0.27
VCANP13611 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.75■□□□□ 0.27
VCANP13611 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.75■□□□□ 0.27
VCANP13611 AL359711.2-201ENST00000563105 872 ntBASIC16.75■□□□□ 0.27
VCANP13611 AC091167.2-201ENST00000579581 588 ntBASIC16.75■□□□□ 0.27
VCANP13611 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.75■□□□□ 0.27
VCANP13611 AP003392.6-201ENST00000607709 325 ntBASIC16.75■□□□□ 0.27
VCANP13611 LARP4-220ENST00000615080 856 ntTSL 5 BASIC16.75■□□□□ 0.27
VCANP13611 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.75■□□□□ 0.27
VCANP13611 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VCANP13611 AC067852.2-201ENST00000590513 2313 ntBASIC16.75■□□□□ 0.27
VCANP13611 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
VCANP13611 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VCANP13611 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VCANP13611 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VCANP13611 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC16.74■□□□□ 0.27
VCANP13611 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.74■□□□□ 0.27
VCANP13611 AC016694.1-201ENST00000434179 700 ntBASIC16.74■□□□□ 0.27
VCANP13611 AL049840.4-201ENST00000602422 811 ntBASIC16.74■□□□□ 0.27
VCANP13611 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VCANP13611 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.74■□□□□ 0.27
VCANP13611 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.74■□□□□ 0.27
VCANP13611 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VCANP13611 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
VCANP13611 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VCANP13611 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VCANP13611 PARVG-202ENST00000415224 999 ntTSL 2 BASIC16.74■□□□□ 0.27
VCANP13611 APOA2-204ENST00000464492 530 ntTSL 3 BASIC16.74■□□□□ 0.27
VCANP13611 RN7SL11P-201ENST00000471305 293 ntBASIC16.74■□□□□ 0.27
VCANP13611 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC16.74■□□□□ 0.27
VCANP13611 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC16.74■□□□□ 0.27
VCANP13611 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.74■□□□□ 0.27
VCANP13611 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VCANP13611 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC16.74■□□□□ 0.27
VCANP13611 AC138951.2-201ENST00000623455 1161 ntBASIC16.74■□□□□ 0.27
VCANP13611 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VCANP13611 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
VCANP13611 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
VCANP13611 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms