Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.04■□□□□ 0.16
TNFP01375 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.04■□□□□ 0.16
TNFP01375 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.04■□□□□ 0.16
TNFP01375 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.04■□□□□ 0.16
TNFP01375 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.04■□□□□ 0.16
TNFP01375 RN7SL204P-201ENST00000582831 262 ntBASIC16.04■□□□□ 0.16
TNFP01375 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
TNFP01375 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.04■□□□□ 0.16
TNFP01375 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.04■□□□□ 0.16
TNFP01375 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
TNFP01375 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TNFP01375 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
TNFP01375 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
TNFP01375 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
TNFP01375 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.04■□□□□ 0.16
TNFP01375 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
TNFP01375 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.04■□□□□ 0.16
TNFP01375 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TNFP01375 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.03■□□□□ 0.16
TNFP01375 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
TNFP01375 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.03■□□□□ 0.16
TNFP01375 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.03■□□□□ 0.16
TNFP01375 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.03■□□□□ 0.16
TNFP01375 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.03■□□□□ 0.16
TNFP01375 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.03■□□□□ 0.16
TNFP01375 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.03■□□□□ 0.16
TNFP01375 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.03■□□□□ 0.16
TNFP01375 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.03■□□□□ 0.16
TNFP01375 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.03■□□□□ 0.16
TNFP01375 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
TNFP01375 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.03■□□□□ 0.16
TNFP01375 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.03■□□□□ 0.16
TNFP01375 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.03■□□□□ 0.16
TNFP01375 LINC02560-201ENST00000596379 459 ntBASIC16.03■□□□□ 0.16
TNFP01375 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.03■□□□□ 0.16
TNFP01375 AC026979.3-201ENST00000607315 403 ntBASIC16.03■□□□□ 0.16
TNFP01375 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.03■□□□□ 0.16
TNFP01375 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.03■□□□□ 0.16
TNFP01375 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
TNFP01375 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TNFP01375 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TNFP01375 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.02■□□□□ 0.16
TNFP01375 AC005622.1-201ENST00000636801 1703 ntBASIC16.02■□□□□ 0.16
TNFP01375 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
TNFP01375 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
TNFP01375 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
TNFP01375 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TNFP01375 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TNFP01375 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
TNFP01375 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.02■□□□□ 0.16
TNFP01375 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TNFP01375 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TNFP01375 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TNFP01375 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TNFP01375 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TNFP01375 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
TNFP01375 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TNFP01375 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TNFP01375 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.02■□□□□ 0.16
TNFP01375 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.02■□□□□ 0.16
TNFP01375 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TNFP01375 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.02■□□□□ 0.16
TNFP01375 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.02■□□□□ 0.16
TNFP01375 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.02■□□□□ 0.16
TNFP01375 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.02■□□□□ 0.16
TNFP01375 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.02■□□□□ 0.16
TNFP01375 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.02■□□□□ 0.16
TNFP01375 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
TNFP01375 AC008761.3-201ENST00000624803 892 ntBASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms