Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP1O15259 AC098859.1-201ENST00000502915 1238 ntBASIC20.73■□□□□ 0.91
NPHP1O15259 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP1O15259 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC20.73■□□□□ 0.91
NPHP1O15259 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC20.73■□□□□ 0.91
NPHP1O15259 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC20.73■□□□□ 0.91
NPHP1O15259 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC20.73■□□□□ 0.91
NPHP1O15259 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP1O15259 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
NPHP1O15259 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP1O15259 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC20.73■□□□□ 0.91
NPHP1O15259 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP1O15259 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
NPHP1O15259 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP1O15259 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP1O15259 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
NPHP1O15259 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC20.73■□□□□ 0.91
NPHP1O15259 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC20.73■□□□□ 0.91
NPHP1O15259 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP1O15259 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPHP1O15259 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
NPHP1O15259 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP1O15259 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
NPHP1O15259 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP1O15259 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.72■□□□□ 0.91
NPHP1O15259 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP1O15259 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC20.72■□□□□ 0.91
NPHP1O15259 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
NPHP1O15259 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC20.72■□□□□ 0.91
NPHP1O15259 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC20.72■□□□□ 0.91
NPHP1O15259 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP1O15259 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP1O15259 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.72■□□□□ 0.91
NPHP1O15259 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP1O15259 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP1O15259 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP1O15259 AC098614.1-201ENST00000368528 745 ntBASIC20.72■□□□□ 0.91
NPHP1O15259 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC20.72■□□□□ 0.91
NPHP1O15259 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
NPHP1O15259 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
NPHP1O15259 OSM-203ENST00000403463 464 ntTSL 3 BASIC20.72■□□□□ 0.91
NPHP1O15259 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC20.72■□□□□ 0.91
NPHP1O15259 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC20.72■□□□□ 0.91
NPHP1O15259 ARL16-202ENST00000570561 768 ntTSL 2 BASIC20.72■□□□□ 0.91
NPHP1O15259 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC20.72■□□□□ 0.91
NPHP1O15259 AL844908.2-201ENST00000609461 460 ntBASIC20.72■□□□□ 0.91
NPHP1O15259 AC116353.5-201ENST00000638148 1699 ntBASIC20.72■□□□□ 0.91
NPHP1O15259 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.72■□□□□ 0.91
NPHP1O15259 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP1O15259 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP1O15259 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP1O15259 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP1O15259 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP1O15259 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP1O15259 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NPHP1O15259 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.72■□□□□ 0.91
NPHP1O15259 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP1O15259 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
NPHP1O15259 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP1O15259 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP1O15259 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.71■□□□□ 0.91
NPHP1O15259 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP1O15259 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC20.71■□□□□ 0.91
NPHP1O15259 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.71■□□□□ 0.91
NPHP1O15259 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC20.71■□□□□ 0.91
NPHP1O15259 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP1O15259 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
NPHP1O15259 ARSEP1-201ENST00000420443 635 ntBASIC20.71■□□□□ 0.91
NPHP1O15259 HLA-V-201ENST00000429037 534 ntBASIC20.71■□□□□ 0.91
NPHP1O15259 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP1O15259 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC20.71■□□□□ 0.91
NPHP1O15259 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC20.71■□□□□ 0.91
NPHP1O15259 GNAQP1-201ENST00000444815 1067 ntBASIC20.71■□□□□ 0.91
NPHP1O15259 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC20.71■□□□□ 0.91
NPHP1O15259 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC20.71■□□□□ 0.91
NPHP1O15259 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC20.71■□□□□ 0.91
NPHP1O15259 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC20.71■□□□□ 0.91
NPHP1O15259 AC104794.3-201ENST00000566840 1248 ntBASIC20.71■□□□□ 0.91
NPHP1O15259 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
NPHP1O15259 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP1O15259 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP1O15259 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC20.71■□□□□ 0.91
NPHP1O15259 TUBB8P12-201ENST00000308911 1335 ntBASIC20.71■□□□□ 0.91
NPHP1O15259 TUBB7P-202ENST00000428444 1305 ntBASIC20.71■□□□□ 0.91
NPHP1O15259 TUBB8P7-204ENST00000567960 1332 ntBASIC20.71■□□□□ 0.91
NPHP1O15259 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP1O15259 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC20.71■□□□□ 0.91
NPHP1O15259 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP1O15259 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
NPHP1O15259 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPHP1O15259 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.91
NPHP1O15259 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC20.7■□□□□ 0.91
NPHP1O15259 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC20.7■□□□□ 0.91
NPHP1O15259 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP1O15259 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC20.7■□□□□ 0.9
NPHP1O15259 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
NPHP1O15259 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP1O15259 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
NPHP1O15259 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP1O15259 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms