Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
UBFD1O14562 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
UBFD1O14562 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
UBFD1O14562 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
UBFD1O14562 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.15
UBFD1O14562 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.02■□□□□ 0.15
UBFD1O14562 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.02■□□□□ 0.15
UBFD1O14562 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
UBFD1O14562 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 AC103702.1-201ENST00000548801 2630 ntBASIC16.01■□□□□ 0.15
UBFD1O14562 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.01■□□□□ 0.15
UBFD1O14562 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.01■□□□□ 0.15
UBFD1O14562 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.01■□□□□ 0.15
UBFD1O14562 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 MRPL20P1-201ENST00000400819 433 ntBASIC16.01■□□□□ 0.15
UBFD1O14562 FAM185BP-201ENST00000443595 716 ntBASIC16.01■□□□□ 0.15
UBFD1O14562 FAM197Y8-203ENST00000450145 560 ntBASIC16.01■□□□□ 0.15
UBFD1O14562 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
UBFD1O14562 EMBP1-201ENST00000458200 901 ntBASIC16.01■□□□□ 0.15
UBFD1O14562 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.01■□□□□ 0.15
UBFD1O14562 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.01■□□□□ 0.15
UBFD1O14562 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.01■□□□□ 0.15
UBFD1O14562 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
UBFD1O14562 MIR1199-201ENST00000621445 119 ntBASIC16.01■□□□□ 0.15
UBFD1O14562 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.01■□□□□ 0.15
UBFD1O14562 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
UBFD1O14562 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.01■□□□□ 0.15
UBFD1O14562 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
UBFD1O14562 PRAL-201ENST00000624952 3286 ntBASIC16.01■□□□□ 0.15
UBFD1O14562 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.01■□□□□ 0.15
UBFD1O14562 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.01■□□□□ 0.15
UBFD1O14562 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 AC144831.1-201ENST00000573312 2656 ntBASIC16.01■□□□□ 0.15
UBFD1O14562 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
UBFD1O14562 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
UBFD1O14562 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16■□□□□ 0.15
UBFD1O14562 AC126177.1-201ENST00000547829 2218 ntBASIC16■□□□□ 0.15
UBFD1O14562 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16■□□□□ 0.15
UBFD1O14562 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
UBFD1O14562 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
UBFD1O14562 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16■□□□□ 0.15
UBFD1O14562 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16■□□□□ 0.15
UBFD1O14562 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16■□□□□ 0.15
UBFD1O14562 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16■□□□□ 0.15
UBFD1O14562 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
UBFD1O14562 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16■□□□□ 0.15
UBFD1O14562 MTRF1LP2-201ENST00000506027 1122 ntBASIC16■□□□□ 0.15
UBFD1O14562 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16■□□□□ 0.15
UBFD1O14562 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
UBFD1O14562 MIR4515-201ENST00000584082 81 ntBASIC16■□□□□ 0.15
UBFD1O14562 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16■□□□□ 0.15
UBFD1O14562 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16■□□□□ 0.15
UBFD1O14562 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16■□□□□ 0.15
UBFD1O14562 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16■□□□□ 0.15
UBFD1O14562 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
UBFD1O14562 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16■□□□□ 0.15
UBFD1O14562 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
UBFD1O14562 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
UBFD1O14562 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.99■□□□□ 0.15
UBFD1O14562 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
UBFD1O14562 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.99■□□□□ 0.15
UBFD1O14562 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
UBFD1O14562 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.99■□□□□ 0.15
UBFD1O14562 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.99■□□□□ 0.15
UBFD1O14562 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms