Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AL078644.1-201ENST00000609881 752 ntBASIC17.14■□□□□ 0.33
AP4E1Q9UPM8 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.14■□□□□ 0.33
AP4E1Q9UPM8 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.14■□□□□ 0.33
AP4E1Q9UPM8 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.14■□□□□ 0.33
AP4E1Q9UPM8 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
AP4E1Q9UPM8 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
AP4E1Q9UPM8 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
AP4E1Q9UPM8 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
AP4E1Q9UPM8 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
AP4E1Q9UPM8 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
AP4E1Q9UPM8 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
AP4E1Q9UPM8 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
AP4E1Q9UPM8 MTHFR-217ENST00000641820 1569 ntBASIC17.14■□□□□ 0.33
AP4E1Q9UPM8 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
AP4E1Q9UPM8 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
AP4E1Q9UPM8 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
AP4E1Q9UPM8 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 AC002056.1-201ENST00000395613 760 ntBASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 AC112191.1-201ENST00000523689 701 ntBASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
AP4E1Q9UPM8 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 KRT18P34-201ENST00000488218 1270 ntBASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 AC002347.1-201ENST00000569543 541 ntBASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 AL161645.1-201ENST00000622716 1255 ntBASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 AL139384.1-201ENST00000612143 3047 ntBASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
AP4E1Q9UPM8 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms