Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 Z92544.3-201ENST00000624747 417 ntBASIC16.56■□□□□ 0.24
LHX3Q9UBR4 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 U82695.1-201ENST00000635752 1889 ntBASIC16.56■□□□□ 0.24
LHX3Q9UBR4 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
LHX3Q9UBR4 AL592424.1-201ENST00000563624 1536 ntBASIC16.55■□□□□ 0.24
LHX3Q9UBR4 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 AC084018.2-201ENST00000613093 2607 ntBASIC16.55■□□□□ 0.24
LHX3Q9UBR4 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.55■□□□□ 0.24
LHX3Q9UBR4 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 RNA5SP410-201ENST00000516285 106 ntBASIC16.55■□□□□ 0.24
LHX3Q9UBR4 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 AC069262.1-201ENST00000539058 672 ntBASIC16.55■□□□□ 0.24
LHX3Q9UBR4 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 AC061975.2-201ENST00000581722 295 ntBASIC16.55■□□□□ 0.24
LHX3Q9UBR4 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.55■□□□□ 0.24
LHX3Q9UBR4 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LHX3Q9UBR4 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms