Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
MMP28Q9H239 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.66□□□□□ -0.06
MMP28Q9H239 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
MMP28Q9H239 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
MMP28Q9H239 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
MMP28Q9H239 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC14.66□□□□□ -0.06
MMP28Q9H239 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
MMP28Q9H239 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 BET1L-202ENST00000332865 533 ntTSL 5 BASIC14.66□□□□□ -0.06
MMP28Q9H239 IPPK-202ENST00000375522 882 ntTSL 3 BASIC14.66□□□□□ -0.06
MMP28Q9H239 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
MMP28Q9H239 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC14.66□□□□□ -0.06
MMP28Q9H239 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC14.66□□□□□ -0.06
MMP28Q9H239 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC14.66□□□□□ -0.06
MMP28Q9H239 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC14.66□□□□□ -0.06
MMP28Q9H239 HCG4P8-203ENST00000443049 980 ntBASIC14.66□□□□□ -0.06
MMP28Q9H239 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
MMP28Q9H239 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC14.66□□□□□ -0.06
MMP28Q9H239 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC14.66□□□□□ -0.06
MMP28Q9H239 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC14.66□□□□□ -0.06
MMP28Q9H239 RNF126P1-202ENST00000569893 925 ntBASIC14.66□□□□□ -0.06
MMP28Q9H239 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC14.66□□□□□ -0.06
MMP28Q9H239 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC14.66□□□□□ -0.06
MMP28Q9H239 AC106881.1-201ENST00000605849 3329 ntBASIC14.66□□□□□ -0.06
MMP28Q9H239 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC14.66□□□□□ -0.06
MMP28Q9H239 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MMP28Q9H239 UBC-206ENST00000538617 1303 ntTSL 5 BASIC14.66□□□□□ -0.06
MMP28Q9H239 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.65□□□□□ -0.06
MMP28Q9H239 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC14.65□□□□□ -0.06
MMP28Q9H239 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC14.65□□□□□ -0.06
MMP28Q9H239 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
MMP28Q9H239 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.65□□□□□ -0.06
MMP28Q9H239 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
MMP28Q9H239 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
MMP28Q9H239 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 PTK2-216ENST00000519881 863 ntTSL 3 BASIC14.65□□□□□ -0.06
MMP28Q9H239 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC14.65□□□□□ -0.06
MMP28Q9H239 AC011498.5-201ENST00000592027 486 ntBASIC14.65□□□□□ -0.06
MMP28Q9H239 AC069148.1-201ENST00000608741 768 ntBASIC14.65□□□□□ -0.06
MMP28Q9H239 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
MMP28Q9H239 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
MMP28Q9H239 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
MMP28Q9H239 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.65□□□□□ -0.06
MMP28Q9H239 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
MMP28Q9H239 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.65□□□□□ -0.06
MMP28Q9H239 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
MMP28Q9H239 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
MMP28Q9H239 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
MMP28Q9H239 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MMP28Q9H239 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
MMP28Q9H239 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC14.64□□□□□ -0.07
MMP28Q9H239 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms