Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 AC004840.1-201ENST00000636359 365 ntBASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 AC005052.1-201ENST00000625181 2492 ntBASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 SPTLC1P1-201ENST00000447199 261 ntBASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 FLJ38576-201ENST00000623820 2459 ntBASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PAAF1Q9BRP4 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 CRB3P1-201ENST00000449338 276 ntBASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 AP005018.1-201ENST00000525475 301 ntBASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 AL512361.1-201ENST00000554200 418 ntBASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 AC024267.1-201ENST00000582320 895 ntBASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 AC011676.5-201ENST00000624864 2660 ntBASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PAAF1Q9BRP4 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms