Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 SART3-203ENST00000546611 1184 ntBASIC12.43□□□□□ -0.42
LINC00477Q96M19 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 SDCCAG3P1-201ENST00000589292 1150 ntBASIC12.43□□□□□ -0.42
LINC00477Q96M19 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 HARS-204ENST00000438307 1789 ntTSL 2 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 RAB17-203ENST00000409576 466 ntTSL 3 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 TSPY19P-201ENST00000418461 509 ntBASIC12.42□□□□□ -0.42
LINC00477Q96M19 CDK2AP2P3-201ENST00000422476 372 ntBASIC12.42□□□□□ -0.42
LINC00477Q96M19 TSPY18P-201ENST00000441642 509 ntBASIC12.42□□□□□ -0.42
LINC00477Q96M19 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 NT5C-211ENST00000582170 653 ntTSL 3 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC12.42□□□□□ -0.42
LINC00477Q96M19 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC12.42□□□□□ -0.42
LINC00477Q96M19 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LINC00477Q96M19 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 SP100-205ENST00000409824 1802 ntTSL 5 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 AL162727.3-201ENST00000635661 2787 ntBASIC12.41□□□□□ -0.42
LINC00477Q96M19 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 ING5-213ENST00000636051 4199 ntTSL 5 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC12.41□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms