Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
LRCH3Q96II8 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LRCH3Q96II8 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.77■□□□□ 0.44
LRCH3Q96II8 RPL7P3-201ENST00000441388 714 ntBASIC17.77■□□□□ 0.44
LRCH3Q96II8 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC17.77■□□□□ 0.44
LRCH3Q96II8 PRYP6-201ENST00000514804 343 ntBASIC17.77■□□□□ 0.44
LRCH3Q96II8 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LRCH3Q96II8 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC17.77■□□□□ 0.44
LRCH3Q96II8 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LRCH3Q96II8 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.77■□□□□ 0.44
LRCH3Q96II8 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.77■□□□□ 0.43
LRCH3Q96II8 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LRCH3Q96II8 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.77■□□□□ 0.43
LRCH3Q96II8 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LRCH3Q96II8 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LRCH3Q96II8 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LRCH3Q96II8 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.77■□□□□ 0.43
LRCH3Q96II8 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
LRCH3Q96II8 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
LRCH3Q96II8 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRCH3Q96II8 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LRCH3Q96II8 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRCH3Q96II8 HCG11-201ENST00000411553 5696 ntBASIC17.76■□□□□ 0.43
LRCH3Q96II8 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.76■□□□□ 0.43
LRCH3Q96II8 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRCH3Q96II8 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.76■□□□□ 0.43
LRCH3Q96II8 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
LRCH3Q96II8 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRCH3Q96II8 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRCH3Q96II8 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC17.76■□□□□ 0.43
LRCH3Q96II8 AC104457.1-201ENST00000401024 814 ntBASIC17.76■□□□□ 0.43
LRCH3Q96II8 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRCH3Q96II8 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC17.76■□□□□ 0.43
LRCH3Q96II8 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC17.76■□□□□ 0.43
LRCH3Q96II8 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC17.76■□□□□ 0.43
LRCH3Q96II8 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRCH3Q96II8 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC17.76■□□□□ 0.43
LRCH3Q96II8 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17.76■□□□□ 0.43
LRCH3Q96II8 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.76■□□□□ 0.43
LRCH3Q96II8 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC17.76■□□□□ 0.43
LRCH3Q96II8 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC17.76■□□□□ 0.43
LRCH3Q96II8 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRCH3Q96II8 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRCH3Q96II8 AL022328.1-201ENST00000610050 478 ntBASIC17.76■□□□□ 0.43
LRCH3Q96II8 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRCH3Q96II8 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.76■□□□□ 0.43
LRCH3Q96II8 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRCH3Q96II8 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LRCH3Q96II8 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.76■□□□□ 0.43
LRCH3Q96II8 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRCH3Q96II8 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRCH3Q96II8 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRCH3Q96II8 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 REXO1L9P-201ENST00000604264 2108 ntBASIC17.75■□□□□ 0.43
LRCH3Q96II8 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRCH3Q96II8 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LRCH3Q96II8 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LRCH3Q96II8 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRCH3Q96II8 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 BCRP2-202ENST00000447763 634 ntBASIC17.75■□□□□ 0.43
LRCH3Q96II8 EIF4HP1-201ENST00000453115 687 ntBASIC17.75■□□□□ 0.43
LRCH3Q96II8 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRCH3Q96II8 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 BCRP6-201ENST00000510112 632 ntBASIC17.75■□□□□ 0.43
LRCH3Q96II8 BCRP7-201ENST00000511549 544 ntBASIC17.75■□□□□ 0.43
LRCH3Q96II8 AP001258.2-201ENST00000529891 490 ntBASIC17.75■□□□□ 0.43
LRCH3Q96II8 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 MIR7845-201ENST00000618396 99 ntBASIC17.75■□□□□ 0.43
LRCH3Q96II8 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LRCH3Q96II8 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRCH3Q96II8 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRCH3Q96II8 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRCH3Q96II8 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.75■□□□□ 0.43
LRCH3Q96II8 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRCH3Q96II8 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRCH3Q96II8 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRCH3Q96II8 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRCH3Q96II8 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRCH3Q96II8 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.74■□□□□ 0.43
LRCH3Q96II8 SDHAP3-202ENST00000515467 728 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms