Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 KRT17P7-201ENST00000451704 1104 ntBASIC16.71■□□□□ 0.27
CHFRQ96EP1 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CHFRQ96EP1 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHFRQ96EP1 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CHFRQ96EP1 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHFRQ96EP1 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CHFRQ96EP1 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CHFRQ96EP1 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CHFRQ96EP1 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
CHFRQ96EP1 AC106820.2-201ENST00000563775 3264 ntBASIC16.71■□□□□ 0.26
CHFRQ96EP1 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 GGT4P-201ENST00000623672 1708 ntBASIC16.7■□□□□ 0.26
CHFRQ96EP1 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 AC139713.2-201ENST00000641328 2723 ntBASIC16.7■□□□□ 0.26
CHFRQ96EP1 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 AC138969.3-201ENST00000546612 1459 ntBASIC16.7■□□□□ 0.26
CHFRQ96EP1 AC138932.2-201ENST00000548268 1459 ntBASIC16.7■□□□□ 0.26
CHFRQ96EP1 AC126755.4-201ENST00000549796 1459 ntBASIC16.7■□□□□ 0.26
CHFRQ96EP1 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 ARSEP1-201ENST00000420443 635 ntBASIC16.7■□□□□ 0.26
CHFRQ96EP1 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHFRQ96EP1 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.7■□□□□ 0.26
CHFRQ96EP1 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CHFRQ96EP1 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHFRQ96EP1 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHFRQ96EP1 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHFRQ96EP1 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHFRQ96EP1 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.69■□□□□ 0.26
CHFRQ96EP1 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
CHFRQ96EP1 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHFRQ96EP1 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHFRQ96EP1 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CHFRQ96EP1 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CHFRQ96EP1 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHFRQ96EP1 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHFRQ96EP1 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.69■□□□□ 0.26
CHFRQ96EP1 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CHFRQ96EP1 SPDYE17-201ENST00000412399 783 ntBASIC16.69■□□□□ 0.26
CHFRQ96EP1 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.69■□□□□ 0.26
CHFRQ96EP1 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.69■□□□□ 0.26
CHFRQ96EP1 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHFRQ96EP1 RN7SL618P-201ENST00000477850 296 ntBASIC16.69■□□□□ 0.26
CHFRQ96EP1 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.69■□□□□ 0.26
CHFRQ96EP1 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.69■□□□□ 0.26
CHFRQ96EP1 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.69■□□□□ 0.26
CHFRQ96EP1 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.69■□□□□ 0.26
CHFRQ96EP1 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHFRQ96EP1 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHFRQ96EP1 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms