Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 WDR53-204ENST00000433160 887 ntTSL 5 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 HLA-J-202ENST00000469281 1241 ntBASIC14.66□□□□□ -0.06
SKA3Q8IX90 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 POLD2P1-201ENST00000511220 997 ntBASIC14.66□□□□□ -0.06
SKA3Q8IX90 KRT18P58-201ENST00000527480 1120 ntBASIC14.66□□□□□ -0.06
SKA3Q8IX90 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 KRT19P2-202ENST00000557173 1012 ntBASIC14.66□□□□□ -0.06
SKA3Q8IX90 RPL28-209ENST00000560055 670 ntTSL 3 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 SLC9A3P2-201ENST00000447821 2021 ntBASIC14.66□□□□□ -0.06
SKA3Q8IX90 AL512652.2-201ENST00000625156 1716 ntBASIC14.66□□□□□ -0.06
SKA3Q8IX90 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
SKA3Q8IX90 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SKA3Q8IX90 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SKA3Q8IX90 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SKA3Q8IX90 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.65□□□□□ -0.06
SKA3Q8IX90 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SKA3Q8IX90 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SKA3Q8IX90 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SKA3Q8IX90 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SKA3Q8IX90 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SKA3Q8IX90 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 STARD13-205ENST00000439831 945 ntTSL 2 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.65□□□□□ -0.06
SKA3Q8IX90 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SKA3Q8IX90 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 AL671883.3-201ENST00000603274 991 ntBASIC14.65□□□□□ -0.06
SKA3Q8IX90 AL513190.1-201ENST00000621254 727 ntBASIC14.65□□□□□ -0.06
SKA3Q8IX90 AC092865.6-201ENST00000642101 219 ntBASIC14.65□□□□□ -0.06
SKA3Q8IX90 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SKA3Q8IX90 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SKA3Q8IX90 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SKA3Q8IX90 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SKA3Q8IX90 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.65□□□□□ -0.06
SKA3Q8IX90 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms