Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SOX4Q06945 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.54■□□□□ 0.4
SOX4Q06945 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX4Q06945 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX4Q06945 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX4Q06945 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX4Q06945 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.54■□□□□ 0.4
SOX4Q06945 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.54■□□□□ 0.4
SOX4Q06945 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX4Q06945 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX4Q06945 AC236430.1-201ENST00000402231 743 ntBASIC17.54■□□□□ 0.4
SOX4Q06945 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.54■□□□□ 0.4
SOX4Q06945 TSPY16P-201ENST00000449843 468 ntBASIC17.54■□□□□ 0.4
SOX4Q06945 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.54■□□□□ 0.4
SOX4Q06945 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.54■□□□□ 0.4
SOX4Q06945 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.54■□□□□ 0.4
SOX4Q06945 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.54■□□□□ 0.4
SOX4Q06945 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.54■□□□□ 0.4
SOX4Q06945 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.54■□□□□ 0.4
SOX4Q06945 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.54■□□□□ 0.4
SOX4Q06945 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.54■□□□□ 0.4
SOX4Q06945 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.54■□□□□ 0.4
SOX4Q06945 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SOX4Q06945 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SOX4Q06945 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX4Q06945 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX4Q06945 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.53■□□□□ 0.4
SOX4Q06945 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SOX4Q06945 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SOX4Q06945 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.53■□□□□ 0.4
SOX4Q06945 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.53■□□□□ 0.4
SOX4Q06945 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX4Q06945 U82695.1-201ENST00000635752 1889 ntBASIC17.53■□□□□ 0.4
SOX4Q06945 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.53■□□□□ 0.4
SOX4Q06945 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX4Q06945 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX4Q06945 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SOX4Q06945 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX4Q06945 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.53■□□□□ 0.4
SOX4Q06945 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
SOX4Q06945 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.53■□□□□ 0.4
SOX4Q06945 AL080243.2-201ENST00000418783 582 ntBASIC17.53■□□□□ 0.4
SOX4Q06945 AC002472.2-201ENST00000442739 958 ntBASIC17.53■□□□□ 0.4
SOX4Q06945 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
SOX4Q06945 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.53■□□□□ 0.4
SOX4Q06945 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SOX4Q06945 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.53■□□□□ 0.4
SOX4Q06945 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.53■□□□□ 0.4
SOX4Q06945 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.53■□□□□ 0.4
SOX4Q06945 AL589739.1-201ENST00000607720 493 ntBASIC17.53■□□□□ 0.4
SOX4Q06945 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.53■□□□□ 0.4
SOX4Q06945 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.53■□□□□ 0.4
SOX4Q06945 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX4Q06945 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX4Q06945 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX4Q06945 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SOX4Q06945 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SOX4Q06945 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX4Q06945 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX4Q06945 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SOX4Q06945 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.52■□□□□ 0.4
SOX4Q06945 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SOX4Q06945 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.52■□□□□ 0.4
SOX4Q06945 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
SOX4Q06945 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.52■□□□□ 0.4
SOX4Q06945 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SOX4Q06945 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SOX4Q06945 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SOX4Q06945 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SOX4Q06945 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.52■□□□□ 0.4
SOX4Q06945 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SOX4Q06945 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SOX4Q06945 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SOX4Q06945 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
SOX4Q06945 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SOX4Q06945 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SOX4Q06945 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
SOX4Q06945 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SOX4Q06945 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
SOX4Q06945 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SOX4Q06945 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SOX4Q06945 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.52■□□□□ 0.4
SOX4Q06945 AL035633.1-201ENST00000406139 838 ntBASIC17.52■□□□□ 0.4
SOX4Q06945 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.52■□□□□ 0.4
SOX4Q06945 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.52■□□□□ 0.4
SOX4Q06945 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SOX4Q06945 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.52■□□□□ 0.4
SOX4Q06945 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.52■□□□□ 0.4
SOX4Q06945 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.52■□□□□ 0.4
SOX4Q06945 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.52■□□□□ 0.4
SOX4Q06945 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SOX4Q06945 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.52■□□□□ 0.4
SOX4Q06945 AC024267.1-201ENST00000582320 895 ntBASIC17.52■□□□□ 0.4
SOX4Q06945 AC138761.1-201ENST00000584393 385 ntBASIC17.52■□□□□ 0.4
SOX4Q06945 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
SOX4Q06945 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.52■□□□□ 0.4
SOX4Q06945 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.52■□□□□ 0.4
SOX4Q06945 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
SOX4Q06945 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
SOX4Q06945 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms