Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SRP54P61011 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
SRP54P61011 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
SRP54P61011 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SRP54P61011 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SRP54P61011 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
SRP54P61011 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.29■□□□□ 0.2
SRP54P61011 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SRP54P61011 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.29■□□□□ 0.2
SRP54P61011 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
SRP54P61011 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SRP54P61011 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SRP54P61011 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SRP54P61011 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.29■□□□□ 0.2
SRP54P61011 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.29■□□□□ 0.2
SRP54P61011 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.29■□□□□ 0.2
SRP54P61011 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SRP54P61011 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.29■□□□□ 0.2
SRP54P61011 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.29■□□□□ 0.2
SRP54P61011 MIR943-201ENST00000401286 94 ntBASIC16.29■□□□□ 0.2
SRP54P61011 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
SRP54P61011 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC16.29■□□□□ 0.2
SRP54P61011 AC107890.1-201ENST00000422478 521 ntBASIC16.29■□□□□ 0.2
SRP54P61011 AC142381.1-201ENST00000426099 345 ntBASIC16.29■□□□□ 0.2
SRP54P61011 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.29■□□□□ 0.2
SRP54P61011 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.29■□□□□ 0.2
SRP54P61011 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.29■□□□□ 0.2
SRP54P61011 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.29■□□□□ 0.2
SRP54P61011 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.29■□□□□ 0.2
SRP54P61011 LINC02084-201ENST00000606069 1096 ntBASIC16.29■□□□□ 0.2
SRP54P61011 AL139011.1-202ENST00000642063 584 ntBASIC16.29■□□□□ 0.2
SRP54P61011 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.29■□□□□ 0.2
SRP54P61011 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SRP54P61011 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.29■□□□□ 0.2
SRP54P61011 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
SRP54P61011 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SRP54P61011 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.29■□□□□ 0.2
SRP54P61011 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SRP54P61011 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SRP54P61011 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.29■□□□□ 0.2
SRP54P61011 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SRP54P61011 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.28■□□□□ 0.2
SRP54P61011 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
SRP54P61011 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
SRP54P61011 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.28■□□□□ 0.2
SRP54P61011 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
SRP54P61011 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
SRP54P61011 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.28■□□□□ 0.2
SRP54P61011 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.28■□□□□ 0.2
SRP54P61011 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
SRP54P61011 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
SRP54P61011 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SRP54P61011 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.28■□□□□ 0.2
SRP54P61011 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.28■□□□□ 0.2
SRP54P61011 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.28■□□□□ 0.2
SRP54P61011 BCRP1-201ENST00000444246 691 ntBASIC16.28■□□□□ 0.2
SRP54P61011 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.28■□□□□ 0.2
SRP54P61011 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SRP54P61011 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.28■□□□□ 0.2
SRP54P61011 MIR3197-201ENST00000582241 73 ntBASIC16.28■□□□□ 0.2
SRP54P61011 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.28■□□□□ 0.2
SRP54P61011 AL390955.2-201ENST00000603032 514 ntBASIC16.28■□□□□ 0.2
SRP54P61011 AL096865.1-201ENST00000606796 927 ntBASIC16.28■□□□□ 0.2
SRP54P61011 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.28■□□□□ 0.2
SRP54P61011 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 AL645728.1-201ENST00000366221 2101 ntBASIC16.28■□□□□ 0.2
SRP54P61011 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 AL645608.8-201ENST00000606034 2086 ntBASIC16.28■□□□□ 0.2
SRP54P61011 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SRP54P61011 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.28■□□□□ 0.2
SRP54P61011 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SRP54P61011 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SRP54P61011 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SRP54P61011 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
SRP54P61011 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
SRP54P61011 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
SRP54P61011 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms