Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MIR1199-201ENST00000621445 119 ntBASIC16■□□□□ 0.15
FOXA1P55317 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16■□□□□ 0.15
FOXA1P55317 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16■□□□□ 0.15
FOXA1P55317 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16■□□□□ 0.15
FOXA1P55317 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16■□□□□ 0.15
FOXA1P55317 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
FOXA1P55317 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16■□□□□ 0.15
FOXA1P55317 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16■□□□□ 0.15
FOXA1P55317 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16■□□□□ 0.15
FOXA1P55317 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA1P55317 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA1P55317 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16■□□□□ 0.15
FOXA1P55317 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA1P55317 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA1P55317 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16■□□□□ 0.15
FOXA1P55317 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA1P55317 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 AC012569.1-201ENST00000591191 1524 ntBASIC15.99■□□□□ 0.15
FOXA1P55317 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
FOXA1P55317 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
FOXA1P55317 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.99■□□□□ 0.15
FOXA1P55317 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
FOXA1P55317 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.99■□□□□ 0.15
FOXA1P55317 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.99■□□□□ 0.15
FOXA1P55317 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
FOXA1P55317 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
FOXA1P55317 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.99■□□□□ 0.15
FOXA1P55317 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.99■□□□□ 0.15
FOXA1P55317 KRT18P56-201ENST00000507275 550 ntBASIC15.99■□□□□ 0.15
FOXA1P55317 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.99■□□□□ 0.15
FOXA1P55317 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
FOXA1P55317 AC020765.3-201ENST00000613051 740 ntBASIC15.99■□□□□ 0.15
FOXA1P55317 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC15.99■□□□□ 0.15
FOXA1P55317 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.99■□□□□ 0.15
FOXA1P55317 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
FOXA1P55317 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 AP005117.1-202ENST00000581724 1908 ntBASIC15.99■□□□□ 0.15
FOXA1P55317 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.99■□□□□ 0.15
FOXA1P55317 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
FOXA1P55317 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA1P55317 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
FOXA1P55317 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
FOXA1P55317 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
FOXA1P55317 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
FOXA1P55317 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
FOXA1P55317 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXA1P55317 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
FOXA1P55317 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
FOXA1P55317 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC15.98■□□□□ 0.15
FOXA1P55317 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 MRPL20P1-201ENST00000400819 433 ntBASIC15.98■□□□□ 0.15
FOXA1P55317 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.98■□□□□ 0.15
FOXA1P55317 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC15.98■□□□□ 0.15
FOXA1P55317 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXA1P55317 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.98■□□□□ 0.15
FOXA1P55317 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
FOXA1P55317 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXA1P55317 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC15.98■□□□□ 0.15
FOXA1P55317 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXA1P55317 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.98■□□□□ 0.15
FOXA1P55317 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXA1P55317 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXA1P55317 AC005622.1-201ENST00000636801 1703 ntBASIC15.98■□□□□ 0.15
FOXA1P55317 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 AC092384.3-202ENST00000564646 2873 ntBASIC15.98■□□□□ 0.15
FOXA1P55317 AC011270.2-201ENST00000624293 2550 ntBASIC15.98■□□□□ 0.15
FOXA1P55317 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXA1P55317 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
FOXA1P55317 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms