Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.7■□□□□ 0.42
VCPP55072 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.7■□□□□ 0.42
VCPP55072 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.7■□□□□ 0.42
VCPP55072 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
VCPP55072 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.7■□□□□ 0.42
VCPP55072 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.7■□□□□ 0.42
VCPP55072 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
VCPP55072 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCPP55072 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
VCPP55072 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
VCPP55072 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCPP55072 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCPP55072 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.69■□□□□ 0.42
VCPP55072 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCPP55072 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
VCPP55072 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VCPP55072 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.69■□□□□ 0.42
VCPP55072 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.69■□□□□ 0.42
VCPP55072 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC17.69■□□□□ 0.42
VCPP55072 AC125807.1-201ENST00000483097 614 ntBASIC17.69■□□□□ 0.42
VCPP55072 AC069335.1-201ENST00000489972 472 ntBASIC17.69■□□□□ 0.42
VCPP55072 SLC25A6P2-201ENST00000497974 877 ntBASIC17.69■□□□□ 0.42
VCPP55072 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VCPP55072 IGHV3-42-201ENST00000520410 361 ntBASIC17.69■□□□□ 0.42
VCPP55072 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.69■□□□□ 0.42
VCPP55072 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.69■□□□□ 0.42
VCPP55072 AL596325.1-201ENST00000563991 1082 ntBASIC17.69■□□□□ 0.42
VCPP55072 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
VCPP55072 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.69■□□□□ 0.42
VCPP55072 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
VCPP55072 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCPP55072 PCDHB17P-201ENST00000539533 2393 ntBASIC17.69■□□□□ 0.42
VCPP55072 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCPP55072 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.69■□□□□ 0.42
VCPP55072 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
VCPP55072 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.69■□□□□ 0.42
VCPP55072 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VCPP55072 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCPP55072 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VCPP55072 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
VCPP55072 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VCPP55072 OR6D1P-203ENST00000641209 4860 ntBASIC17.69■□□□□ 0.42
VCPP55072 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
VCPP55072 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.68■□□□□ 0.42
VCPP55072 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.68■□□□□ 0.42
VCPP55072 COX5BP8-201ENST00000416911 349 ntBASIC17.68■□□□□ 0.42
VCPP55072 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.68■□□□□ 0.42
VCPP55072 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.68■□□□□ 0.42
VCPP55072 AC087163.2-201ENST00000457299 853 ntBASIC17.68■□□□□ 0.42
VCPP55072 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
VCPP55072 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.68■□□□□ 0.42
VCPP55072 AL512356.2-201ENST00000546955 174 ntBASIC17.68■□□□□ 0.42
VCPP55072 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.68■□□□□ 0.42
VCPP55072 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.68■□□□□ 0.42
VCPP55072 AC027307.3-201ENST00000594262 1100 ntBASIC17.68■□□□□ 0.42
VCPP55072 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
VCPP55072 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.68■□□□□ 0.42
VCPP55072 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.68■□□□□ 0.42
VCPP55072 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCPP55072 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.67■□□□□ 0.42
VCPP55072 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.67■□□□□ 0.42
VCPP55072 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms