Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC22.54■■□□□ 1.2
MSH6P52701 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC22.54■■□□□ 1.2
MSH6P52701 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC22.54■■□□□ 1.2
MSH6P52701 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC22.54■■□□□ 1.2
MSH6P52701 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC22.54■■□□□ 1.2
MSH6P52701 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
MSH6P52701 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
MSH6P52701 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC22.54■■□□□ 1.2
MSH6P52701 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
MSH6P52701 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH6P52701 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH6P52701 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH6P52701 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC22.53■■□□□ 1.2
MSH6P52701 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
MSH6P52701 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC22.53■■□□□ 1.2
MSH6P52701 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC22.53■■□□□ 1.2
MSH6P52701 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
MSH6P52701 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
MSH6P52701 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH6P52701 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
MSH6P52701 ABBA01031663.1-201ENST00000635630 790 ntBASIC22.53■■□□□ 1.2
MSH6P52701 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH6P52701 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
MSH6P52701 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC22.53■■□□□ 1.2
MSH6P52701 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
MSH6P52701 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH6P52701 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
MSH6P52701 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
MSH6P52701 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC22.53■■□□□ 1.2
MSH6P52701 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH6P52701 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH6P52701 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
MSH6P52701 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC22.53■■□□□ 1.2
MSH6P52701 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH6P52701 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH6P52701 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC22.52■■□□□ 1.2
MSH6P52701 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
MSH6P52701 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC22.52■■□□□ 1.2
MSH6P52701 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
MSH6P52701 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
MSH6P52701 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC22.52■■□□□ 1.2
MSH6P52701 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH6P52701 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC22.52■■□□□ 1.2
MSH6P52701 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
MSH6P52701 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH6P52701 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC22.52■■□□□ 1.2
MSH6P52701 LINC01115-203ENST00000606068 577 ntBASIC22.52■■□□□ 1.2
MSH6P52701 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
MSH6P52701 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
MSH6P52701 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
MSH6P52701 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH6P52701 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH6P52701 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
MSH6P52701 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH6P52701 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
MSH6P52701 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH6P52701 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC22.52■■□□□ 1.2
MSH6P52701 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC22.52■■□□□ 1.2
MSH6P52701 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
MSH6P52701 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC22.52■■□□□ 1.2
MSH6P52701 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC22.52■■□□□ 1.2
MSH6P52701 Z97205.2-201ENST00000564697 1639 ntBASIC22.52■■□□□ 1.2
MSH6P52701 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH6P52701 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
MSH6P52701 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH6P52701 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH6P52701 AC026954.1-201ENST00000429771 1293 ntBASIC22.51■■□□□ 1.19
MSH6P52701 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH6P52701 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH6P52701 ENPP7P5-201ENST00000541031 1031 ntBASIC22.51■■□□□ 1.19
MSH6P52701 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
MSH6P52701 AC079328.1-201ENST00000560358 952 ntBASIC22.51■■□□□ 1.19
MSH6P52701 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC22.51■■□□□ 1.19
MSH6P52701 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC22.51■■□□□ 1.19
MSH6P52701 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
MSH6P52701 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC22.51■■□□□ 1.19
MSH6P52701 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
MSH6P52701 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
MSH6P52701 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
MSH6P52701 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH6P52701 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
MSH6P52701 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
MSH6P52701 GATB-213ENST00000515812 1893 ntTSL 5 BASIC22.51■■□□□ 1.19
MSH6P52701 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC22.51■■□□□ 1.19
MSH6P52701 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC22.51■■□□□ 1.19
MSH6P52701 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
MSH6P52701 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
MSH6P52701 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH6P52701 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
MSH6P52701 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
MSH6P52701 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
MSH6P52701 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH6P52701 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
MSH6P52701 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
MSH6P52701 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC22.5■■□□□ 1.19
MSH6P52701 OLR1-203ENST00000432556 950 ntTSL 2 BASIC22.5■■□□□ 1.19
MSH6P52701 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC22.5■■□□□ 1.19
MSH6P52701 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC22.5■■□□□ 1.19
MSH6P52701 AP001258.2-201ENST00000529891 490 ntBASIC22.5■■□□□ 1.19
MSH6P52701 KRT90P-201ENST00000549264 1064 ntBASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms