Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC13.58□□□□□ -0.24
CDX1P47902 TEX30-205ENST00000376029 959 ntTSL 2 BASIC13.58□□□□□ -0.24
CDX1P47902 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC13.58□□□□□ -0.24
CDX1P47902 AL022342.1-201ENST00000400363 863 ntBASIC13.58□□□□□ -0.24
CDX1P47902 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 KLF4P1-201ENST00000412782 1185 ntBASIC13.58□□□□□ -0.24
CDX1P47902 LAGE3P1-201ENST00000425356 484 ntBASIC13.58□□□□□ -0.24
CDX1P47902 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
CDX1P47902 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC13.58□□□□□ -0.24
CDX1P47902 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC13.58□□□□□ -0.24
CDX1P47902 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC13.58□□□□□ -0.24
CDX1P47902 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC13.58□□□□□ -0.24
CDX1P47902 RNF151-202ENST00000569210 853 ntTSL 2 BASIC13.58□□□□□ -0.24
CDX1P47902 STK25P1-201ENST00000585406 838 ntBASIC13.58□□□□□ -0.24
CDX1P47902 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC13.58□□□□□ -0.24
CDX1P47902 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC13.58□□□□□ -0.24
CDX1P47902 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC13.58□□□□□ -0.24
CDX1P47902 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
CDX1P47902 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 IL9RP2-201ENST00000423948 1312 ntBASIC13.58□□□□□ -0.24
CDX1P47902 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC13.58□□□□□ -0.24
CDX1P47902 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC13.58□□□□□ -0.24
CDX1P47902 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
CDX1P47902 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 FLJ16779-201ENST00000612722 7638 ntBASIC13.57□□□□□ -0.24
CDX1P47902 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.57□□□□□ -0.24
CDX1P47902 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
CDX1P47902 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC13.57□□□□□ -0.24
CDX1P47902 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC13.57□□□□□ -0.24
CDX1P47902 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC13.57□□□□□ -0.24
CDX1P47902 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC13.57□□□□□ -0.24
CDX1P47902 AC005104.2-201ENST00000427818 678 ntBASIC13.57□□□□□ -0.24
CDX1P47902 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC13.57□□□□□ -0.24
CDX1P47902 BX005266.1-201ENST00000473402 457 ntBASIC13.57□□□□□ -0.24
CDX1P47902 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC13.57□□□□□ -0.24
CDX1P47902 STK19B-204ENST00000512515 211 ntBASIC13.57□□□□□ -0.24
CDX1P47902 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC13.57□□□□□ -0.24
CDX1P47902 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC13.57□□□□□ -0.24
CDX1P47902 LITAF-211ENST00000572255 516 ntTSL 4 BASIC13.57□□□□□ -0.24
CDX1P47902 PAM16-208ENST00000573553 722 ntTSL 2 BASIC13.57□□□□□ -0.24
CDX1P47902 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
CDX1P47902 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC13.57□□□□□ -0.24
CDX1P47902 AC120114.3-201ENST00000611923 658 ntBASIC13.57□□□□□ -0.24
CDX1P47902 AL589182.2-201ENST00000619332 1049 ntBASIC13.57□□□□□ -0.24
CDX1P47902 AC008735.5-201ENST00000623544 497 ntBASIC13.57□□□□□ -0.24
CDX1P47902 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC13.57□□□□□ -0.24
CDX1P47902 ABBA01031661.1-201ENST00000634362 1253 ntBASIC13.57□□□□□ -0.24
CDX1P47902 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
CDX1P47902 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
CDX1P47902 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC13.57□□□□□ -0.24
CDX1P47902 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC13.57□□□□□ -0.24
CDX1P47902 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
CDX1P47902 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC13.57□□□□□ -0.24
CDX1P47902 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC13.57□□□□□ -0.24
CDX1P47902 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 GSN-206ENST00000394353 2311 ntTSL 2 BASIC13.57□□□□□ -0.24
CDX1P47902 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
CDX1P47902 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC13.57□□□□□ -0.24
CDX1P47902 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CDX1P47902 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC13.57□□□□□ -0.24
CDX1P47902 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC13.56□□□□□ -0.24
CDX1P47902 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC13.56□□□□□ -0.24
CDX1P47902 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 143.2 ms