Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
HNF4AP41235 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.07■□□□□ 0.16
HNF4AP41235 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HNF4AP41235 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HNF4AP41235 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HNF4AP41235 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HNF4AP41235 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HNF4AP41235 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HNF4AP41235 FLJ16779-201ENST00000612722 7638 ntBASIC16.07■□□□□ 0.16
HNF4AP41235 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
HNF4AP41235 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.06■□□□□ 0.16
HNF4AP41235 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
HNF4AP41235 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.06■□□□□ 0.16
HNF4AP41235 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.06■□□□□ 0.16
HNF4AP41235 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.06■□□□□ 0.16
HNF4AP41235 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.06■□□□□ 0.16
HNF4AP41235 MED15P5-201ENST00000423150 992 ntBASIC16.06■□□□□ 0.16
HNF4AP41235 AP000347.1-202ENST00000435868 847 ntBASIC16.06■□□□□ 0.16
HNF4AP41235 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.06■□□□□ 0.16
HNF4AP41235 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.06■□□□□ 0.16
HNF4AP41235 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.06■□□□□ 0.16
HNF4AP41235 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.06■□□□□ 0.16
HNF4AP41235 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HNF4AP41235 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.06■□□□□ 0.16
HNF4AP41235 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.06■□□□□ 0.16
HNF4AP41235 AC140113.2-201ENST00000604370 208 ntBASIC16.06■□□□□ 0.16
HNF4AP41235 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.06■□□□□ 0.16
HNF4AP41235 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.06■□□□□ 0.16
HNF4AP41235 AC010507.1-201ENST00000633895 436 ntBASIC16.06■□□□□ 0.16
HNF4AP41235 AL645728.2-201ENST00000641974 660 ntBASIC16.06■□□□□ 0.16
HNF4AP41235 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.06■□□□□ 0.16
HNF4AP41235 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
HNF4AP41235 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
HNF4AP41235 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HNF4AP41235 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
HNF4AP41235 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HNF4AP41235 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 LINC01144-201ENST00000626198 1710 ntBASIC16.05■□□□□ 0.16
HNF4AP41235 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.05■□□□□ 0.16
HNF4AP41235 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.05■□□□□ 0.16
HNF4AP41235 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.05■□□□□ 0.16
HNF4AP41235 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HNF4AP41235 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.05■□□□□ 0.16
HNF4AP41235 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.05■□□□□ 0.16
HNF4AP41235 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.05■□□□□ 0.16
HNF4AP41235 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.05■□□□□ 0.16
HNF4AP41235 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.05■□□□□ 0.16
HNF4AP41235 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.05■□□□□ 0.16
HNF4AP41235 AC020765.3-201ENST00000613051 740 ntBASIC16.05■□□□□ 0.16
HNF4AP41235 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.05■□□□□ 0.16
HNF4AP41235 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
HNF4AP41235 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.05■□□□□ 0.16
HNF4AP41235 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.05■□□□□ 0.16
HNF4AP41235 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.05■□□□□ 0.16
HNF4AP41235 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HNF4AP41235 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
HNF4AP41235 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.05■□□□□ 0.16
HNF4AP41235 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HNF4AP41235 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.05■□□□□ 0.16
HNF4AP41235 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HNF4AP41235 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HNF4AP41235 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.04■□□□□ 0.16
HNF4AP41235 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.04■□□□□ 0.16
HNF4AP41235 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HNF4AP41235 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HNF4AP41235 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms