Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.15■□□□□ 0.02
RFC3P40938 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFC3P40938 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFC3P40938 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFC3P40938 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
RFC3P40938 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.15■□□□□ 0.02
RFC3P40938 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.15■□□□□ 0.02
RFC3P40938 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFC3P40938 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.15■□□□□ 0.02
RFC3P40938 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFC3P40938 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFC3P40938 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.15■□□□□ 0.02
RFC3P40938 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
RFC3P40938 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.14■□□□□ 0.01
RFC3P40938 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.14■□□□□ 0.01
RFC3P40938 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC15.14■□□□□ 0.01
RFC3P40938 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC15.14■□□□□ 0.01
RFC3P40938 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
RFC3P40938 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.14■□□□□ 0.01
RFC3P40938 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.14■□□□□ 0.01
RFC3P40938 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.14■□□□□ 0.01
RFC3P40938 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.14■□□□□ 0.01
RFC3P40938 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.14■□□□□ 0.01
RFC3P40938 CNN2P2-201ENST00000443536 909 ntBASIC15.14■□□□□ 0.01
RFC3P40938 CNN2P3-201ENST00000450201 906 ntBASIC15.14■□□□□ 0.01
RFC3P40938 AC026150.2-201ENST00000564693 1156 ntBASIC15.14■□□□□ 0.01
RFC3P40938 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
RFC3P40938 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
RFC3P40938 AL136317.3-201ENST00000618497 906 ntBASIC15.14■□□□□ 0.01
RFC3P40938 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.14■□□□□ 0.01
RFC3P40938 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
RFC3P40938 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.14■□□□□ 0.01
RFC3P40938 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
RFC3P40938 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
RFC3P40938 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFC3P40938 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.13■□□□□ 0.01
RFC3P40938 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
RFC3P40938 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.13■□□□□ 0.01
RFC3P40938 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.13■□□□□ 0.01
RFC3P40938 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
RFC3P40938 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
RFC3P40938 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.13■□□□□ 0.01
RFC3P40938 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
RFC3P40938 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC15.13■□□□□ 0.01
RFC3P40938 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
RFC3P40938 PCDH8P1-201ENST00000428983 2773 ntBASIC15.13■□□□□ 0.01
RFC3P40938 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.13■□□□□ 0.01
RFC3P40938 AC008677.1-201ENST00000519230 1561 ntBASIC15.13■□□□□ 0.01
RFC3P40938 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
RFC3P40938 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
RFC3P40938 MIR6080-201ENST00000617359 66 ntBASIC15.13■□□□□ 0.01
RFC3P40938 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.13■□□□□ 0.01
RFC3P40938 AC008267.7-201ENST00000624570 1194 ntBASIC15.13■□□□□ 0.01
RFC3P40938 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 LINC00895-201ENST00000629028 1637 ntBASIC15.13■□□□□ 0.01
RFC3P40938 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.13■□□□□ 0.01
RFC3P40938 TUBB3P1-201ENST00000405796 1332 ntBASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms