Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
BRCA1P38398 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
BRCA1P38398 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC19.65■□□□□ 0.74
BRCA1P38398 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
BRCA1P38398 CNN2P10-201ENST00000443067 918 ntBASIC19.65■□□□□ 0.74
BRCA1P38398 APOA2-204ENST00000464492 530 ntTSL 3 BASIC19.65■□□□□ 0.74
BRCA1P38398 PFN2-215ENST00000497148 743 ntTSL 4 BASIC19.65■□□□□ 0.74
BRCA1P38398 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC19.65■□□□□ 0.74
BRCA1P38398 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
BRCA1P38398 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC19.65■□□□□ 0.74
BRCA1P38398 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
BRCA1P38398 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC19.65■□□□□ 0.74
BRCA1P38398 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC19.65■□□□□ 0.74
BRCA1P38398 AC138627.1-207ENST00000641560 1006 ntBASIC19.65■□□□□ 0.74
BRCA1P38398 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
BRCA1P38398 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.65■□□□□ 0.74
BRCA1P38398 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
BRCA1P38398 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
BRCA1P38398 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.65■□□□□ 0.74
BRCA1P38398 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
BRCA1P38398 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.65■□□□□ 0.74
BRCA1P38398 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
BRCA1P38398 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
BRCA1P38398 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
BRCA1P38398 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
BRCA1P38398 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
BRCA1P38398 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC19.65■□□□□ 0.74
BRCA1P38398 AC128714.1-201ENST00000637035 887 ntBASIC19.65■□□□□ 0.74
BRCA1P38398 AGER-206ENST00000375070 1463 ntTSL 5 BASIC19.64■□□□□ 0.74
BRCA1P38398 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
BRCA1P38398 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
BRCA1P38398 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
BRCA1P38398 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
BRCA1P38398 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
BRCA1P38398 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.64■□□□□ 0.73
BRCA1P38398 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
BRCA1P38398 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19.64■□□□□ 0.73
BRCA1P38398 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
BRCA1P38398 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
BRCA1P38398 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BRCA1P38398 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
BRCA1P38398 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC19.64■□□□□ 0.73
BRCA1P38398 AC092068.3-201ENST00000587894 2016 ntBASIC19.64■□□□□ 0.73
BRCA1P38398 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BRCA1P38398 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
BRCA1P38398 MIR33B-201ENST00000385104 96 ntBASIC19.64■□□□□ 0.73
BRCA1P38398 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC19.64■□□□□ 0.73
BRCA1P38398 AL590640.2-201ENST00000457038 527 ntBASIC19.64■□□□□ 0.73
BRCA1P38398 FXR1-221ENST00000491674 365 ntTSL 2 BASIC19.64■□□□□ 0.73
BRCA1P38398 AP001063.1-201ENST00000568332 529 ntBASIC19.64■□□□□ 0.73
BRCA1P38398 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC19.64■□□□□ 0.73
BRCA1P38398 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC19.64■□□□□ 0.73
BRCA1P38398 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC19.64■□□□□ 0.73
BRCA1P38398 REXO1L8P-201ENST00000604378 1897 ntBASIC19.64■□□□□ 0.73
BRCA1P38398 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BRCA1P38398 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.64■□□□□ 0.73
BRCA1P38398 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
BRCA1P38398 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
BRCA1P38398 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
BRCA1P38398 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC19.64■□□□□ 0.73
BRCA1P38398 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
BRCA1P38398 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BRCA1P38398 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
BRCA1P38398 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
BRCA1P38398 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
BRCA1P38398 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.63■□□□□ 0.73
BRCA1P38398 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC19.63■□□□□ 0.73
BRCA1P38398 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
BRCA1P38398 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
BRCA1P38398 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC19.63■□□□□ 0.73
BRCA1P38398 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC19.63■□□□□ 0.73
BRCA1P38398 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
BRCA1P38398 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC19.63■□□□□ 0.73
BRCA1P38398 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC19.63■□□□□ 0.73
BRCA1P38398 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC19.63■□□□□ 0.73
BRCA1P38398 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
BRCA1P38398 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC19.63■□□□□ 0.73
BRCA1P38398 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
BRCA1P38398 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
BRCA1P38398 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
BRCA1P38398 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.63■□□□□ 0.73
BRCA1P38398 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
BRCA1P38398 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
BRCA1P38398 PCGF3-213ENST00000620529 1899 ntBASIC19.63■□□□□ 0.73
BRCA1P38398 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.63■□□□□ 0.73
BRCA1P38398 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
BRCA1P38398 AC018735.1-201ENST00000437208 1502 ntBASIC19.63■□□□□ 0.73
BRCA1P38398 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
BRCA1P38398 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
BRCA1P38398 BRF1-202ENST00000379932 884 ntTSL 5 BASIC19.62■□□□□ 0.73
BRCA1P38398 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC19.62■□□□□ 0.73
BRCA1P38398 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC19.62■□□□□ 0.73
BRCA1P38398 AC078819.1-201ENST00000547454 765 ntBASIC19.62■□□□□ 0.73
BRCA1P38398 AC012085.1-201ENST00000548270 765 ntBASIC19.62■□□□□ 0.73
BRCA1P38398 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC19.62■□□□□ 0.73
BRCA1P38398 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC19.62■□□□□ 0.73
BRCA1P38398 AC000095.1-201ENST00000603208 874 ntBASIC19.62■□□□□ 0.73
BRCA1P38398 U62317.3-201ENST00000608319 855 ntBASIC19.62■□□□□ 0.73
BRCA1P38398 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC19.62■□□□□ 0.73
BRCA1P38398 AC091812.3-201ENST00000621362 345 ntBASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms