Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 REXO1L8P-201ENST00000604378 1897 ntBASIC15.71■□□□□ 0.11
PTPN6P29350 PCGF3-213ENST00000620529 1899 ntBASIC15.71■□□□□ 0.11
PTPN6P29350 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PTPN6P29350 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.71■□□□□ 0.1
PTPN6P29350 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.71■□□□□ 0.1
PTPN6P29350 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PTPN6P29350 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.71■□□□□ 0.1
PTPN6P29350 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PTPN6P29350 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
PTPN6P29350 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
PTPN6P29350 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN6P29350 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.7■□□□□ 0.1
PTPN6P29350 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.7■□□□□ 0.1
PTPN6P29350 AC104109.2-201ENST00000602919 1418 ntBASIC15.7■□□□□ 0.1
PTPN6P29350 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
PTPN6P29350 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN6P29350 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.7■□□□□ 0.1
PTPN6P29350 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 OR6D1P-203ENST00000641209 4860 ntBASIC15.7■□□□□ 0.1
PTPN6P29350 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.7■□□□□ 0.1
PTPN6P29350 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.7■□□□□ 0.1
PTPN6P29350 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN6P29350 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN6P29350 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.7■□□□□ 0.1
PTPN6P29350 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.7■□□□□ 0.1
PTPN6P29350 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.7■□□□□ 0.1
PTPN6P29350 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 Z83851.2-201ENST00000609564 659 ntBASIC15.7■□□□□ 0.1
PTPN6P29350 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.7■□□□□ 0.1
PTPN6P29350 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
PTPN6P29350 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.7■□□□□ 0.1
PTPN6P29350 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
PTPN6P29350 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 ZNF259P1-201ENST00000407656 1365 ntBASIC15.7■□□□□ 0.1
PTPN6P29350 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN6P29350 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN6P29350 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN6P29350 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
PTPN6P29350 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.7■□□□□ 0.1
PTPN6P29350 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.7■□□□□ 0.1
PTPN6P29350 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.7■□□□□ 0.1
PTPN6P29350 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PTPN6P29350 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN6P29350 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN6P29350 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN6P29350 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN6P29350 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN6P29350 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN6P29350 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN6P29350 LINC01144-201ENST00000626198 1710 ntBASIC15.69■□□□□ 0.1
PTPN6P29350 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN6P29350 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.69■□□□□ 0.1
PTPN6P29350 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PTPN6P29350 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.69■□□□□ 0.1
PTPN6P29350 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
PTPN6P29350 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN6P29350 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.69■□□□□ 0.1
PTPN6P29350 AC009947.1-201ENST00000444350 727 ntBASIC15.69■□□□□ 0.1
PTPN6P29350 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
PTPN6P29350 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.69■□□□□ 0.1
PTPN6P29350 POU5F1P6-201ENST00000466990 990 ntBASIC15.69■□□□□ 0.1
PTPN6P29350 RPS15P9-201ENST00000494093 319 ntBASIC15.69■□□□□ 0.1
PTPN6P29350 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.69■□□□□ 0.1
PTPN6P29350 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.69■□□□□ 0.1
PTPN6P29350 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.69■□□□□ 0.1
PTPN6P29350 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN6P29350 AC034105.1-201ENST00000563488 319 ntBASIC15.69■□□□□ 0.1
PTPN6P29350 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
PTPN6P29350 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.69■□□□□ 0.1
PTPN6P29350 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN6P29350 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.69■□□□□ 0.1
PTPN6P29350 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN6P29350 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.69■□□□□ 0.1
PTPN6P29350 AL353732.1-201ENST00000569618 1459 ntBASIC15.69■□□□□ 0.1
PTPN6P29350 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.69■□□□□ 0.1
PTPN6P29350 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN6P29350 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN6P29350 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PTPN6P29350 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.69■□□□□ 0.1
PTPN6P29350 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.69■□□□□ 0.1
PTPN6P29350 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PTPN6P29350 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms