Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC20.41■□□□□ 0.86
COL5A3P25940 HNRNPUP1-201ENST00000554987 333 ntBASIC20.41■□□□□ 0.86
COL5A3P25940 AL359711.2-201ENST00000563105 872 ntBASIC20.41■□□□□ 0.86
COL5A3P25940 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC20.41■□□□□ 0.86
COL5A3P25940 BTNL10-201ENST00000595971 695 ntBASIC20.41■□□□□ 0.86
COL5A3P25940 AC133539.2-201ENST00000604757 467 ntBASIC20.41■□□□□ 0.86
COL5A3P25940 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC20.41■□□□□ 0.86
COL5A3P25940 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC20.41■□□□□ 0.86
COL5A3P25940 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
COL5A3P25940 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
COL5A3P25940 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
COL5A3P25940 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL5A3P25940 FO681548.1-201ENST00000455617 1132 ntBASIC20.4■□□□□ 0.86
COL5A3P25940 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC20.4■□□□□ 0.86
COL5A3P25940 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL5A3P25940 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC20.4■□□□□ 0.86
COL5A3P25940 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC20.4■□□□□ 0.86
COL5A3P25940 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC20.4■□□□□ 0.86
COL5A3P25940 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC20.4■□□□□ 0.86
COL5A3P25940 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC20.4■□□□□ 0.86
COL5A3P25940 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC20.4■□□□□ 0.86
COL5A3P25940 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
COL5A3P25940 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC20.4■□□□□ 0.86
COL5A3P25940 GPR182-203ENST00000622922 591 ntBASIC20.4■□□□□ 0.86
COL5A3P25940 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.4■□□□□ 0.86
COL5A3P25940 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL5A3P25940 LETM1P2-201ENST00000597330 2178 ntBASIC20.4■□□□□ 0.86
COL5A3P25940 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL5A3P25940 RERG-209ENST00000546331 1383 ntTSL 2 BASIC20.4■□□□□ 0.86
COL5A3P25940 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL5A3P25940 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL5A3P25940 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL5A3P25940 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL5A3P25940 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC20.4■□□□□ 0.86
COL5A3P25940 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL5A3P25940 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
COL5A3P25940 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL5A3P25940 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
COL5A3P25940 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL5A3P25940 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.39■□□□□ 0.86
COL5A3P25940 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
COL5A3P25940 AL592424.1-201ENST00000563624 1536 ntBASIC20.39■□□□□ 0.86
COL5A3P25940 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL5A3P25940 ACTG1P3-201ENST00000431775 1114 ntBASIC20.39■□□□□ 0.86
COL5A3P25940 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC20.39■□□□□ 0.86
COL5A3P25940 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC20.39■□□□□ 0.86
COL5A3P25940 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC20.39■□□□□ 0.86
COL5A3P25940 PTP4A1P2-201ENST00000546033 454 ntBASIC20.39■□□□□ 0.86
COL5A3P25940 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
COL5A3P25940 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL5A3P25940 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL5A3P25940 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL5A3P25940 MSTO2P-201ENST00000314835 1709 ntBASIC20.39■□□□□ 0.85
COL5A3P25940 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL5A3P25940 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL5A3P25940 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
COL5A3P25940 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC20.39■□□□□ 0.85
COL5A3P25940 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL5A3P25940 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL5A3P25940 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC20.39■□□□□ 0.85
COL5A3P25940 AC092933.1-201ENST00000393644 945 ntBASIC20.39■□□□□ 0.85
COL5A3P25940 AC012441.1-201ENST00000446669 685 ntBASIC20.39■□□□□ 0.85
COL5A3P25940 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC20.39■□□□□ 0.85
COL5A3P25940 DUX4L45-201ENST00000566406 1057 ntBASIC20.39■□□□□ 0.85
COL5A3P25940 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC20.39■□□□□ 0.85
COL5A3P25940 AC244093.1-201ENST00000610837 814 ntBASIC20.39■□□□□ 0.85
COL5A3P25940 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC20.39■□□□□ 0.85
COL5A3P25940 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC20.38■□□□□ 0.85
COL5A3P25940 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.38■□□□□ 0.85
COL5A3P25940 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A3P25940 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A3P25940 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC20.38■□□□□ 0.85
COL5A3P25940 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A3P25940 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A3P25940 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A3P25940 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
COL5A3P25940 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A3P25940 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC20.38■□□□□ 0.85
COL5A3P25940 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC20.38■□□□□ 0.85
COL5A3P25940 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC20.38■□□□□ 0.85
COL5A3P25940 AL355864.2-201ENST00000447420 863 ntBASIC20.38■□□□□ 0.85
COL5A3P25940 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC20.38■□□□□ 0.85
COL5A3P25940 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC20.38■□□□□ 0.85
COL5A3P25940 CD74-212ENST00000524315 584 ntTSL 5 BASIC20.38■□□□□ 0.85
COL5A3P25940 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC20.38■□□□□ 0.85
COL5A3P25940 AC005252.2-201ENST00000624630 1141 ntBASIC20.38■□□□□ 0.85
COL5A3P25940 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A3P25940 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A3P25940 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC20.38■□□□□ 0.85
COL5A3P25940 AL691432.1-201ENST00000596308 1422 ntBASIC20.38■□□□□ 0.85
COL5A3P25940 AC078925.2-201ENST00000624013 1973 ntBASIC20.37■□□□□ 0.85
COL5A3P25940 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC20.37■□□□□ 0.85
COL5A3P25940 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A3P25940 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
COL5A3P25940 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms