Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFBP01127 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFBP01127 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFBP01127 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFBP01127 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFBP01127 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PDGFBP01127 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC16.4■□□□□ 0.22
PDGFBP01127 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.22
PDGFBP01127 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.39■□□□□ 0.22
PDGFBP01127 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
PDGFBP01127 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFBP01127 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFBP01127 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFBP01127 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.39■□□□□ 0.21
PDGFBP01127 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.39■□□□□ 0.21
PDGFBP01127 AC006277.1-201ENST00000624348 1610 ntBASIC16.39■□□□□ 0.21
PDGFBP01127 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFBP01127 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFBP01127 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFBP01127 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
PDGFBP01127 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
PDGFBP01127 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFBP01127 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.39■□□□□ 0.21
PDGFBP01127 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC16.39■□□□□ 0.21
PDGFBP01127 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC16.39■□□□□ 0.21
PDGFBP01127 PTP4A1P2-201ENST00000546033 454 ntBASIC16.39■□□□□ 0.21
PDGFBP01127 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
PDGFBP01127 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
PDGFBP01127 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.39■□□□□ 0.21
PDGFBP01127 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFBP01127 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFBP01127 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.39■□□□□ 0.21
PDGFBP01127 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.39■□□□□ 0.21
PDGFBP01127 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFBP01127 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.39■□□□□ 0.21
PDGFBP01127 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.39■□□□□ 0.21
PDGFBP01127 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFBP01127 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFBP01127 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDGFBP01127 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.38■□□□□ 0.21
PDGFBP01127 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.38■□□□□ 0.21
PDGFBP01127 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PDGFBP01127 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFBP01127 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFBP01127 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.38■□□□□ 0.21
PDGFBP01127 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFBP01127 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC16.38■□□□□ 0.21
PDGFBP01127 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFBP01127 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
PDGFBP01127 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFBP01127 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFBP01127 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFBP01127 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
PDGFBP01127 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFBP01127 GGCT-203ENST00000409144 836 ntTSL 2 BASIC16.38■□□□□ 0.21
PDGFBP01127 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.38■□□□□ 0.21
PDGFBP01127 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFBP01127 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.38■□□□□ 0.21
PDGFBP01127 FAM86HP-204ENST00000513466 959 ntBASIC16.38■□□□□ 0.21
PDGFBP01127 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.38■□□□□ 0.21
PDGFBP01127 AP001258.2-201ENST00000529891 490 ntBASIC16.38■□□□□ 0.21
PDGFBP01127 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PDGFBP01127 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFBP01127 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFBP01127 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.38■□□□□ 0.21
PDGFBP01127 AL022328.3-201ENST00000607943 679 ntBASIC16.38■□□□□ 0.21
PDGFBP01127 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC16.38■□□□□ 0.21
PDGFBP01127 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC16.38■□□□□ 0.21
PDGFBP01127 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFBP01127 MSTO2P-201ENST00000314835 1709 ntBASIC16.38■□□□□ 0.21
PDGFBP01127 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.38■□□□□ 0.21
PDGFBP01127 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
PDGFBP01127 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFBP01127 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PDGFBP01127 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
PDGFBP01127 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFBP01127 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDGFBP01127 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PDGFBP01127 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PDGFBP01127 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
PDGFBP01127 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
PDGFBP01127 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.37■□□□□ 0.21
PDGFBP01127 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDGFBP01127 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PDGFBP01127 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
PDGFBP01127 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDGFBP01127 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
PDGFBP01127 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.37■□□□□ 0.21
PDGFBP01127 ZBTB12BP-201ENST00000314232 1122 ntBASIC16.37■□□□□ 0.21
PDGFBP01127 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
PDGFBP01127 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDGFBP01127 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC16.37■□□□□ 0.21
PDGFBP01127 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDGFBP01127 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.37■□□□□ 0.21
PDGFBP01127 AL355864.2-201ENST00000447420 863 ntBASIC16.37■□□□□ 0.21
PDGFBP01127 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC16.37■□□□□ 0.21
PDGFBP01127 AC104306.2-201ENST00000451877 341 ntBASIC16.37■□□□□ 0.21
PDGFBP01127 MPRIPP1-201ENST00000452433 1089 ntBASIC16.37■□□□□ 0.21
PDGFBP01127 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.37■□□□□ 0.21
PDGFBP01127 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms