Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.55■□□□□ 0.24
SHOX2O60902 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
SHOX2O60902 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 KRT8P39-201ENST00000396270 1433 ntBASIC16.55■□□□□ 0.24
SHOX2O60902 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.55■□□□□ 0.24
SHOX2O60902 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.55■□□□□ 0.24
SHOX2O60902 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 AC092127.1-201ENST00000567093 3455 ntBASIC16.55■□□□□ 0.24
SHOX2O60902 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.55■□□□□ 0.24
SHOX2O60902 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC16.55■□□□□ 0.24
SHOX2O60902 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
SHOX2O60902 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.55■□□□□ 0.24
SHOX2O60902 IGHGP-201ENST00000390555 1178 ntBASIC16.55■□□□□ 0.24
SHOX2O60902 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
SHOX2O60902 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.55■□□□□ 0.24
SHOX2O60902 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.55■□□□□ 0.24
SHOX2O60902 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.55■□□□□ 0.24
SHOX2O60902 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.55■□□□□ 0.24
SHOX2O60902 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
SHOX2O60902 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
SHOX2O60902 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.55■□□□□ 0.24
SHOX2O60902 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16.55■□□□□ 0.24
SHOX2O60902 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SHOX2O60902 GPAA1P2-202ENST00000606848 1787 ntBASIC16.55■□□□□ 0.24
SHOX2O60902 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.55■□□□□ 0.24
SHOX2O60902 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 AC105250.1-201ENST00000509378 2057 ntBASIC16.55■□□□□ 0.24
SHOX2O60902 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 MROH4P-201ENST00000431302 1578 ntBASIC16.55■□□□□ 0.24
SHOX2O60902 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHOX2O60902 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.54■□□□□ 0.24
SHOX2O60902 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC16.54■□□□□ 0.24
SHOX2O60902 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.54■□□□□ 0.24
SHOX2O60902 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
SHOX2O60902 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
SHOX2O60902 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.54■□□□□ 0.24
SHOX2O60902 AL353692.3-201ENST00000407031 1396 ntBASIC16.54■□□□□ 0.24
SHOX2O60902 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.54■□□□□ 0.24
SHOX2O60902 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SHOX2O60902 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC16.54■□□□□ 0.24
SHOX2O60902 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC16.54■□□□□ 0.24
SHOX2O60902 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.54■□□□□ 0.24
SHOX2O60902 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.54■□□□□ 0.24
SHOX2O60902 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.54■□□□□ 0.24
SHOX2O60902 AC079602.3-201ENST00000623931 403 ntBASIC16.54■□□□□ 0.24
SHOX2O60902 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.54■□□□□ 0.24
SHOX2O60902 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC16.54■□□□□ 0.24
SHOX2O60902 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SHOX2O60902 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.54■□□□□ 0.24
SHOX2O60902 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHOX2O60902 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 KRT17P2-201ENST00000300992 1314 ntBASIC16.53■□□□□ 0.24
SHOX2O60902 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC16.53■□□□□ 0.24
SHOX2O60902 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms