Protein–RNA interactions for Protein: O43541

SMAD6, Mothers against decapentaplegic homolog 6, humanhuman

Known RBP Predictions only

Length 496 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD6O43541 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SMAD6O43541 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SMAD6O43541 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SMAD6O43541 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SMAD6O43541 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SMAD6O43541 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SMAD6O43541 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.63■□□□□ 0.25
SMAD6O43541 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.63■□□□□ 0.25
SMAD6O43541 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.63■□□□□ 0.25
SMAD6O43541 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SMAD6O43541 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.63■□□□□ 0.25
SMAD6O43541 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMAD6O43541 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.62■□□□□ 0.25
SMAD6O43541 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.62■□□□□ 0.25
SMAD6O43541 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.62■□□□□ 0.25
SMAD6O43541 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMAD6O43541 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMAD6O43541 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.62■□□□□ 0.25
SMAD6O43541 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.62■□□□□ 0.25
SMAD6O43541 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.62■□□□□ 0.25
SMAD6O43541 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.62■□□□□ 0.25
SMAD6O43541 PKD1P1-201ENST00000458669 6805 ntBASIC16.62■□□□□ 0.25
SMAD6O43541 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SMAD6O43541 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SMAD6O43541 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SMAD6O43541 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
SMAD6O43541 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SMAD6O43541 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.62■□□□□ 0.25
SMAD6O43541 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMAD6O43541 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SMAD6O43541 KLF2P3-201ENST00000451977 1087 ntBASIC16.62■□□□□ 0.25
SMAD6O43541 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SMAD6O43541 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMAD6O43541 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.62■□□□□ 0.25
SMAD6O43541 AL390955.2-201ENST00000603032 514 ntBASIC16.62■□□□□ 0.25
SMAD6O43541 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
SMAD6O43541 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SMAD6O43541 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.62■□□□□ 0.25
SMAD6O43541 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMAD6O43541 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.62■□□□□ 0.25
SMAD6O43541 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SMAD6O43541 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.62■□□□□ 0.25
SMAD6O43541 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SMAD6O43541 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMAD6O43541 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SMAD6O43541 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.62■□□□□ 0.25
SMAD6O43541 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
SMAD6O43541 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SMAD6O43541 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SMAD6O43541 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SMAD6O43541 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.61■□□□□ 0.25
SMAD6O43541 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMAD6O43541 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
SMAD6O43541 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SMAD6O43541 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMAD6O43541 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMAD6O43541 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMAD6O43541 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMAD6O43541 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SMAD6O43541 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.61■□□□□ 0.25
SMAD6O43541 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMAD6O43541 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMAD6O43541 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMAD6O43541 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
SMAD6O43541 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMAD6O43541 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMAD6O43541 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
SMAD6O43541 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.61■□□□□ 0.25
SMAD6O43541 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
SMAD6O43541 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.61■□□□□ 0.25
SMAD6O43541 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.61■□□□□ 0.25
SMAD6O43541 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.61■□□□□ 0.25
SMAD6O43541 AC125807.1-201ENST00000483097 614 ntBASIC16.61■□□□□ 0.25
SMAD6O43541 AC067863.1-201ENST00000494933 530 ntBASIC16.61■□□□□ 0.25
SMAD6O43541 RNA5SP410-201ENST00000516285 106 ntBASIC16.61■□□□□ 0.25
SMAD6O43541 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.61■□□□□ 0.25
SMAD6O43541 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.61■□□□□ 0.25
SMAD6O43541 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.61■□□□□ 0.25
SMAD6O43541 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMAD6O43541 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.61■□□□□ 0.25
SMAD6O43541 AC005498.2-205ENST00000593218 784 ntBASIC16.61■□□□□ 0.25
SMAD6O43541 AC003101.2-201ENST00000612557 442 ntBASIC16.61■□□□□ 0.25
SMAD6O43541 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMAD6O43541 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.61■□□□□ 0.25
SMAD6O43541 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SMAD6O43541 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMAD6O43541 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
SMAD6O43541 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.61■□□□□ 0.25
SMAD6O43541 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMAD6O43541 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.61■□□□□ 0.25
SMAD6O43541 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.61■□□□□ 0.25
SMAD6O43541 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SMAD6O43541 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.61■□□□□ 0.25
SMAD6O43541 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.61■□□□□ 0.25
SMAD6O43541 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SMAD6O43541 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SMAD6O43541 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SMAD6O43541 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMAD6O43541 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SMAD6O43541 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms