Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 AC079328.2-201ENST00000561241 3354 ntBASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.48■□□□□ 0.55
COL4A3BPQ9Y5P4 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 AC079140.1-201ENST00000508039 487 ntBASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 AC243562.1-201ENST00000560672 389 ntBASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 AC021097.1-201ENST00000607902 574 ntBASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
COL4A3BPQ9Y5P4 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 AC006449.5-201ENST00000610658 2098 ntBASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 GGT3P-204ENST00000453783 1664 ntBASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 WASH6P-202ENST00000359512 1437 ntBASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 GGT4P-201ENST00000623672 1708 ntBASIC18.46■□□□□ 0.55
COL4A3BPQ9Y5P4 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
COL4A3BPQ9Y5P4 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A3BPQ9Y5P4 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A3BPQ9Y5P4 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
COL4A3BPQ9Y5P4 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
COL4A3BPQ9Y5P4 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms