Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 IRF5-214ENST00000613821 595 ntTSL 5 BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 SNX33P1-201ENST00000592116 1762 ntBASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 AC105917.1-201ENST00000506637 2539 ntBASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RHBDD3Q9Y3P4 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 ABBA01031661.1-201ENST00000634362 1253 ntBASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 AL805961.1-202ENST00000641562 540 ntBASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 AF228730.7-201ENST00000641842 219 ntBASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 AL139011.1-202ENST00000642063 584 ntBASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
RHBDD3Q9Y3P4 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 AC006277.1-201ENST00000624348 1610 ntBASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 TOP3BP1-201ENST00000420768 1380 ntBASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.52□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms