Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 AC005052.1-201ENST00000625181 2492 ntBASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 ALG1L5P-201ENST00000482043 771 ntBASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 AC091812.2-201ENST00000619081 385 ntBASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CUEDC1Q9NWM3 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.02■□□□□ 0.15
CUEDC1Q9NWM3 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
CUEDC1Q9NWM3 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CUEDC1Q9NWM3 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.02■□□□□ 0.15
CUEDC1Q9NWM3 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CUEDC1Q9NWM3 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.02■□□□□ 0.15
CUEDC1Q9NWM3 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.15
CUEDC1Q9NWM3 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CUEDC1Q9NWM3 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
CUEDC1Q9NWM3 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CUEDC1Q9NWM3 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.02■□□□□ 0.15
CUEDC1Q9NWM3 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 CROCCP1-201ENST00000426910 5675 ntBASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 PMS2P4-201ENST00000412466 1052 ntBASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 FAM58CP-201ENST00000435741 640 ntBASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 COX20P2-201ENST00000452636 358 ntBASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 MIR3909-201ENST00000579518 119 ntBASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 GGT3P-204ENST00000453783 1664 ntBASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.01■□□□□ 0.15
CUEDC1Q9NWM3 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16■□□□□ 0.15
CUEDC1Q9NWM3 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms