Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
SSU72Q9NP77 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.42■□□□□ 0.22
SSU72Q9NP77 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.42■□□□□ 0.22
SSU72Q9NP77 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
SSU72Q9NP77 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.42■□□□□ 0.22
SSU72Q9NP77 AL121956.5-201ENST00000625261 221 ntBASIC16.42■□□□□ 0.22
SSU72Q9NP77 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
SSU72Q9NP77 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.42■□□□□ 0.22
SSU72Q9NP77 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
SSU72Q9NP77 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SSU72Q9NP77 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.42■□□□□ 0.22
SSU72Q9NP77 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
SSU72Q9NP77 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SSU72Q9NP77 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SSU72Q9NP77 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SSU72Q9NP77 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SSU72Q9NP77 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
SSU72Q9NP77 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SSU72Q9NP77 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.42■□□□□ 0.22
SSU72Q9NP77 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SSU72Q9NP77 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SSU72Q9NP77 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SSU72Q9NP77 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.42■□□□□ 0.22
SSU72Q9NP77 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SSU72Q9NP77 AL109954.1-202ENST00000564051 2148 ntBASIC16.42■□□□□ 0.22
SSU72Q9NP77 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SSU72Q9NP77 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SSU72Q9NP77 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 PRAL-201ENST00000624952 3286 ntBASIC16.41■□□□□ 0.22
SSU72Q9NP77 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 AP002383.4-201ENST00000442518 975 ntBASIC16.41■□□□□ 0.22
SSU72Q9NP77 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 MIR5100-201ENST00000579544 119 ntBASIC16.41■□□□□ 0.22
SSU72Q9NP77 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.41■□□□□ 0.22
SSU72Q9NP77 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SSU72Q9NP77 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 AC005622.1-201ENST00000636801 1703 ntBASIC16.4■□□□□ 0.22
SSU72Q9NP77 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 ARMC10P1-201ENST00000313754 855 ntBASIC16.4■□□□□ 0.22
SSU72Q9NP77 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 HCG4-201ENST00000418983 998 ntBASIC16.4■□□□□ 0.22
SSU72Q9NP77 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 BX005266.1-201ENST00000473402 457 ntBASIC16.4■□□□□ 0.22
SSU72Q9NP77 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms