Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TM9SF3Q9HD45 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 AC021097.1-201ENST00000607902 574 ntBASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 FRMD8P1-201ENST00000440433 1524 ntBASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 AC106886.4-201ENST00000623557 2502 ntBASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TM9SF3Q9HD45 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TM9SF3Q9HD45 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
TM9SF3Q9HD45 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.52■□□□□ 0.23
TM9SF3Q9HD45 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
TM9SF3Q9HD45 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.23
TM9SF3Q9HD45 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
TM9SF3Q9HD45 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
TM9SF3Q9HD45 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 MIR4492-201ENST00000581627 80 ntBASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 AC012645.4-201ENST00000610691 1061 ntBASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TM9SF3Q9HD45 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms