Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM39Q9HCM9 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 AC106886.4-201ENST00000623557 2502 ntBASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 TIMM8BP1-201ENST00000452384 211 ntBASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 AP000344.2-201ENST00000512987 629 ntBASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 SNHG9-202ENST00000564014 471 ntBASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 AL135744.1-201ENST00000565098 629 ntBASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 AL513210.1-201ENST00000629608 234 ntBASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM39Q9HCM9 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 AC016027.1-202ENST00000607927 1699 ntBASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 KRT18P34-201ENST00000488218 1270 ntBASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 KRT8P48-201ENST00000515599 1220 ntBASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 AC243562.1-201ENST00000560672 389 ntBASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 AP001160.2-201ENST00000596071 487 ntBASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
TRIM39Q9HCM9 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms