Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4CQ96CF2 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4CQ96CF2 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4CQ96CF2 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4CQ96CF2 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.74■□□□□ 0.75
CHMP4CQ96CF2 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CHMP4CQ96CF2 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP4CQ96CF2 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
CHMP4CQ96CF2 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 NEK7-201ENST00000367383 586 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 MPDU1-223ENST00000582151 728 ntBASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 AP001350.2-201ENST00000625104 1094 ntBASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP4CQ96CF2 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 YBX1P5-201ENST00000509441 847 ntBASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4CQ96CF2 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 LBH-203ENST00000404397 543 ntTSL 4 BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4CQ96CF2 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC19.7■□□□□ 0.74
CHMP4CQ96CF2 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CHMP4CQ96CF2 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4CQ96CF2 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4CQ96CF2 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CHMP4CQ96CF2 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4CQ96CF2 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.7■□□□□ 0.74
CHMP4CQ96CF2 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4CQ96CF2 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4CQ96CF2 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms