Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 REXO1L6P-202ENST00000619970 1078 ntBASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 SNX33P1-201ENST00000592116 1762 ntBASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 RAB17-203ENST00000409576 466 ntTSL 3 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 SART3-203ENST00000546611 1184 ntBASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 AC087641.1-201ENST00000557561 1021 ntBASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 AC020765.3-201ENST00000613051 740 ntBASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC54Q8NEL0 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 HYMAI-201ENST00000635591 3347 ntBASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 DFFB-203ENST00000341385 572 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 HIST2H3DP1-201ENST00000401004 416 ntBASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 SAPCD2P3-201ENST00000455031 850 ntBASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 SDCCAG3P1-201ENST00000589292 1150 ntBASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 AL445228.2-201ENST00000605589 952 ntBASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 AC107918.4-202ENST00000641623 219 ntBASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 WT1-209ENST00000530998 2421 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms