Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 AL596325.1-201ENST00000563991 1082 ntBASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HDDC3Q8N4P3 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 HLA-V-201ENST00000429037 534 ntBASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 AC098859.1-201ENST00000502915 1238 ntBASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 AC027369.6-201ENST00000525520 931 ntBASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 AL645608.8-201ENST00000606034 2086 ntBASIC16.54■□□□□ 0.24
HDDC3Q8N4P3 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 AL512652.2-201ENST00000625156 1716 ntBASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 AC092580.3-201ENST00000430932 139 ntBASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 MEIS3P1-201ENST00000495167 958 ntBASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms