Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC60Q8IWA6 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 AL353705.2-201ENST00000428243 662 ntBASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 BASP1P1-201ENST00000430708 665 ntBASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 AC092364.2-202ENST00000597012 1073 ntBASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC60Q8IWA6 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 MIR3197-201ENST00000582241 73 ntBASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 AC073592.8-201ENST00000624126 511 ntBASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 LINC01144-201ENST00000626198 1710 ntBASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CCDC60Q8IWA6 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 AC005622.1-201ENST00000636801 1703 ntBASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 UGT1A2P-201ENST00000454886 866 ntBASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 RNA5SP421-201ENST00000516864 134 ntBASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 MAX-210ENST00000555419 765 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 AC061975.2-201ENST00000581722 295 ntBASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC60Q8IWA6 AL138828.2-201ENST00000615812 383 ntBASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms