Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NUDCD3Q8IVD9 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
NUDCD3Q8IVD9 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NUDCD3Q8IVD9 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NUDCD3Q8IVD9 REXO1L8P-201ENST00000604378 1897 ntBASIC16.5■□□□□ 0.23
NUDCD3Q8IVD9 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NUDCD3Q8IVD9 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 AC079776.2-201ENST00000641154 1609 ntBASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 AC010331.1-201ENST00000611423 582 ntBASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NUDCD3Q8IVD9 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 ABCD1P5-201ENST00000445663 754 ntBASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 POU5F1P6-201ENST00000466990 990 ntBASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 DUX4L26-201ENST00000489078 1255 ntBASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 AC114341.1-201ENST00000618070 349 ntBASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 PRAL-201ENST00000624952 3286 ntBASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.48■□□□□ 0.23
NUDCD3Q8IVD9 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms