Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 AC004832.2-201ENST00000426397 482 ntBASIC17.84■□□□□ 0.45
KRT39Q6A163 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
KRT39Q6A163 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
KRT39Q6A163 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.84■□□□□ 0.45
KRT39Q6A163 AC099522.2-201ENST00000607001 744 ntBASIC17.84■□□□□ 0.45
KRT39Q6A163 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
KRT39Q6A163 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
KRT39Q6A163 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
KRT39Q6A163 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.84■□□□□ 0.45
KRT39Q6A163 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.84■□□□□ 0.45
KRT39Q6A163 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
KRT39Q6A163 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
KRT39Q6A163 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
KRT39Q6A163 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
KRT39Q6A163 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
KRT39Q6A163 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
KRT39Q6A163 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
KRT39Q6A163 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.45
KRT39Q6A163 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
KRT39Q6A163 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.83■□□□□ 0.45
KRT39Q6A163 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
KRT39Q6A163 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.83■□□□□ 0.45
KRT39Q6A163 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
KRT39Q6A163 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
KRT39Q6A163 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
KRT39Q6A163 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
KRT39Q6A163 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.83■□□□□ 0.44
KRT39Q6A163 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.83■□□□□ 0.44
KRT39Q6A163 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
KRT39Q6A163 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
KRT39Q6A163 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
KRT39Q6A163 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
KRT39Q6A163 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
KRT39Q6A163 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.83■□□□□ 0.44
KRT39Q6A163 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.83■□□□□ 0.44
KRT39Q6A163 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.83■□□□□ 0.44
KRT39Q6A163 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.83■□□□□ 0.44
KRT39Q6A163 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
KRT39Q6A163 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.83■□□□□ 0.44
KRT39Q6A163 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
KRT39Q6A163 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.83■□□□□ 0.44
KRT39Q6A163 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
KRT39Q6A163 AC091812.2-201ENST00000619081 385 ntBASIC17.83■□□□□ 0.44
KRT39Q6A163 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
KRT39Q6A163 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
KRT39Q6A163 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
KRT39Q6A163 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
KRT39Q6A163 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
KRT39Q6A163 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
KRT39Q6A163 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
KRT39Q6A163 AC005622.1-201ENST00000636801 1703 ntBASIC17.83■□□□□ 0.44
KRT39Q6A163 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
KRT39Q6A163 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
KRT39Q6A163 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.83■□□□□ 0.44
KRT39Q6A163 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.83■□□□□ 0.44
KRT39Q6A163 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
KRT39Q6A163 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
KRT39Q6A163 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.82■□□□□ 0.44
KRT39Q6A163 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
KRT39Q6A163 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
KRT39Q6A163 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.82■□□□□ 0.44
KRT39Q6A163 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
KRT39Q6A163 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
KRT39Q6A163 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
KRT39Q6A163 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.82■□□□□ 0.44
KRT39Q6A163 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.82■□□□□ 0.44
KRT39Q6A163 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
KRT39Q6A163 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.82■□□□□ 0.44
KRT39Q6A163 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.82■□□□□ 0.44
KRT39Q6A163 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.82■□□□□ 0.44
KRT39Q6A163 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.82■□□□□ 0.44
KRT39Q6A163 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.82■□□□□ 0.44
KRT39Q6A163 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.82■□□□□ 0.44
KRT39Q6A163 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.82■□□□□ 0.44
KRT39Q6A163 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.82■□□□□ 0.44
KRT39Q6A163 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms