Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 AL162726.2-201ENST00000438986 1017 ntBASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 AC233724.13-201ENST00000598383 410 ntBASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 AL031731.1-201ENST00000642131 2094 ntBASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC88AQ3V6T2 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 RNA5SP412-201ENST00000516234 123 ntBASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 USB1-202ENST00000423271 1217 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 AC093724.1-201ENST00000448659 1027 ntBASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 PTK7-212ENST00000476760 902 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 PARP8-206ENST00000503665 572 ntTSL 4 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 RIT1-205ENST00000539040 919 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 AC009542.2-202ENST00000619004 1067 ntBASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CCDC88AQ3V6T2 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 CDC14C-201ENST00000428251 1719 ntBASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 APRT-204ENST00000563655 709 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 MIR5189-201ENST00000577370 114 ntBASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 PCDHB18P-201ENST00000524813 2368 ntBASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC88AQ3V6T2 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 C2orf69P2-201ENST00000562032 1123 ntBASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC88AQ3V6T2 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms