Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGCS2P54868 AC090340.1-201ENST00000620778 4980 ntBASIC18.94■□□□□ 0.62
HMGCS2P54868 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGCS2P54868 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HMGCS2P54868 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGCS2P54868 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
HMGCS2P54868 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HMGCS2P54868 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGCS2P54868 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGCS2P54868 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGCS2P54868 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.93■□□□□ 0.62
HMGCS2P54868 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGCS2P54868 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
HMGCS2P54868 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
HMGCS2P54868 MXI1-205ENST00000393134 889 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGCS2P54868 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.93■□□□□ 0.62
HMGCS2P54868 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.93■□□□□ 0.62
HMGCS2P54868 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.93■□□□□ 0.62
HMGCS2P54868 AC055876.2-201ENST00000531834 546 ntBASIC18.93■□□□□ 0.62
HMGCS2P54868 TPRX2P-201ENST00000535362 881 ntBASIC18.93■□□□□ 0.62
HMGCS2P54868 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HMGCS2P54868 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGCS2P54868 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC18.93■□□□□ 0.62
HMGCS2P54868 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC18.93■□□□□ 0.62
HMGCS2P54868 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HMGCS2P54868 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGCS2P54868 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
HMGCS2P54868 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGCS2P54868 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGCS2P54868 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HMGCS2P54868 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.93■□□□□ 0.62
HMGCS2P54868 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HMGCS2P54868 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGCS2P54868 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HMGCS2P54868 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HMGCS2P54868 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
HMGCS2P54868 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
HMGCS2P54868 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
HMGCS2P54868 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.92■□□□□ 0.62
HMGCS2P54868 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.92■□□□□ 0.62
HMGCS2P54868 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.92■□□□□ 0.62
HMGCS2P54868 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.92■□□□□ 0.62
HMGCS2P54868 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC18.92■□□□□ 0.62
HMGCS2P54868 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC18.92■□□□□ 0.62
HMGCS2P54868 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
HMGCS2P54868 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 AC011495.1-201ENST00000498085 584 ntBASIC18.92■□□□□ 0.62
HMGCS2P54868 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 AC023310.3-201ENST00000557027 670 ntBASIC18.92■□□□□ 0.62
HMGCS2P54868 AC100756.1-201ENST00000562736 682 ntBASIC18.92■□□□□ 0.62
HMGCS2P54868 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 AC138749.3-201ENST00000567691 622 ntBASIC18.92■□□□□ 0.62
HMGCS2P54868 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.92■□□□□ 0.62
HMGCS2P54868 AC116165.1-201ENST00000611806 668 ntBASIC18.92■□□□□ 0.62
HMGCS2P54868 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.92■□□□□ 0.62
HMGCS2P54868 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC18.92■□□□□ 0.62
HMGCS2P54868 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
HMGCS2P54868 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.92■□□□□ 0.62
HMGCS2P54868 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.92■□□□□ 0.62
HMGCS2P54868 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
HMGCS2P54868 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGCS2P54868 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
HMGCS2P54868 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
HMGCS2P54868 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGCS2P54868 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
HMGCS2P54868 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGCS2P54868 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.91■□□□□ 0.62
HMGCS2P54868 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGCS2P54868 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC18.91■□□□□ 0.62
HMGCS2P54868 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
HMGCS2P54868 AC106820.2-201ENST00000563775 3264 ntBASIC18.91■□□□□ 0.62
HMGCS2P54868 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
HMGCS2P54868 AC139713.2-201ENST00000641328 2723 ntBASIC18.91■□□□□ 0.62
HMGCS2P54868 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
HMGCS2P54868 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC18.91■□□□□ 0.62
HMGCS2P54868 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
HMGCS2P54868 AL603756.1-201ENST00000606511 2163 ntBASIC18.91■□□□□ 0.62
HMGCS2P54868 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
HMGCS2P54868 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.91■□□□□ 0.62
HMGCS2P54868 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC18.91■□□□□ 0.62
HMGCS2P54868 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC18.91■□□□□ 0.62
HMGCS2P54868 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms