Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.41■□□□□ 0.38
COL4A4P53420 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
COL4A4P53420 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL4A4P53420 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.41■□□□□ 0.38
COL4A4P53420 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.41■□□□□ 0.38
COL4A4P53420 AL391256.1-201ENST00000443260 1855 ntBASIC17.41■□□□□ 0.38
COL4A4P53420 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.41■□□□□ 0.38
COL4A4P53420 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL4A4P53420 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL4A4P53420 AL031731.1-201ENST00000642131 2094 ntBASIC17.41■□□□□ 0.38
COL4A4P53420 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL4A4P53420 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL4A4P53420 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
COL4A4P53420 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.41■□□□□ 0.38
COL4A4P53420 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC17.41■□□□□ 0.38
COL4A4P53420 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.41■□□□□ 0.38
COL4A4P53420 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL4A4P53420 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.41■□□□□ 0.38
COL4A4P53420 RN7SL219P-201ENST00000582872 296 ntBASIC17.41■□□□□ 0.38
COL4A4P53420 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC17.41■□□□□ 0.38
COL4A4P53420 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL4A4P53420 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL4A4P53420 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL4A4P53420 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL4A4P53420 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL4A4P53420 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL4A4P53420 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.41■□□□□ 0.38
COL4A4P53420 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL4A4P53420 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.41■□□□□ 0.38
COL4A4P53420 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL4A4P53420 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
COL4A4P53420 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.4■□□□□ 0.38
COL4A4P53420 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A4P53420 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
COL4A4P53420 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A4P53420 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.4■□□□□ 0.38
COL4A4P53420 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A4P53420 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A4P53420 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A4P53420 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A4P53420 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A4P53420 BOLA2P3-201ENST00000404566 256 ntBASIC17.4■□□□□ 0.38
COL4A4P53420 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.4■□□□□ 0.38
COL4A4P53420 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.4■□□□□ 0.38
COL4A4P53420 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.4■□□□□ 0.38
COL4A4P53420 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.4■□□□□ 0.38
COL4A4P53420 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC17.4■□□□□ 0.38
COL4A4P53420 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC17.4■□□□□ 0.38
COL4A4P53420 AC244093.1-201ENST00000610837 814 ntBASIC17.4■□□□□ 0.38
COL4A4P53420 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A4P53420 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A4P53420 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A4P53420 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A4P53420 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A4P53420 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A4P53420 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A4P53420 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.4■□□□□ 0.38
COL4A4P53420 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A4P53420 AL512652.2-201ENST00000625156 1716 ntBASIC17.4■□□□□ 0.38
COL4A4P53420 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.4■□□□□ 0.38
COL4A4P53420 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.4■□□□□ 0.38
COL4A4P53420 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL4A4P53420 GGT3P-204ENST00000453783 1664 ntBASIC17.39■□□□□ 0.38
COL4A4P53420 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A4P53420 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
COL4A4P53420 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
COL4A4P53420 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A4P53420 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
COL4A4P53420 AC108725.1-201ENST00000495472 409 ntBASIC17.39■□□□□ 0.37
COL4A4P53420 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.39■□□□□ 0.37
COL4A4P53420 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.39■□□□□ 0.37
COL4A4P53420 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A4P53420 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A4P53420 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A4P53420 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A4P53420 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.39■□□□□ 0.37
COL4A4P53420 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A4P53420 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.39■□□□□ 0.37
COL4A4P53420 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A4P53420 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A4P53420 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.39■□□□□ 0.37
COL4A4P53420 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A4P53420 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A4P53420 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A4P53420 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A4P53420 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A4P53420 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A4P53420 MIR1247-201ENST00000408206 136 ntBASIC17.39■□□□□ 0.37
COL4A4P53420 AC099336.1-201ENST00000417053 1171 ntBASIC17.39■□□□□ 0.37
COL4A4P53420 RAD18-204ENST00000418463 563 ntTSL 4 BASIC17.39■□□□□ 0.37
COL4A4P53420 RAD18-205ENST00000421052 582 ntTSL 3 BASIC17.39■□□□□ 0.37
COL4A4P53420 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.39■□□□□ 0.37
COL4A4P53420 MIR5189-201ENST00000577370 114 ntBASIC17.39■□□□□ 0.37
COL4A4P53420 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.39■□□□□ 0.37
COL4A4P53420 AL391069.4-201ENST00000609583 481 ntBASIC17.39■□□□□ 0.37
COL4A4P53420 MIR8072-201ENST00000614241 80 ntBASIC17.39■□□□□ 0.37
COL4A4P53420 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC17.39■□□□□ 0.37
COL4A4P53420 AL033527.5-202ENST00000641632 1098 ntBASIC17.39■□□□□ 0.37
COL4A4P53420 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL4A4P53420 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms