Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
CDX1P47902 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC13.6□□□□□ -0.23
CDX1P47902 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 AC139887.3-201ENST00000568585 713 ntBASIC13.6□□□□□ -0.23
CDX1P47902 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC13.6□□□□□ -0.23
CDX1P47902 AC109462.3-201ENST00000573934 613 ntBASIC13.6□□□□□ -0.23
CDX1P47902 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC13.6□□□□□ -0.23
CDX1P47902 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 AC019129.2-201ENST00000609837 1235 ntBASIC13.6□□□□□ -0.23
CDX1P47902 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
CDX1P47902 FAM215A-202ENST00000632077 792 ntBASIC13.6□□□□□ -0.23
CDX1P47902 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.6□□□□□ -0.23
CDX1P47902 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC13.6□□□□□ -0.23
CDX1P47902 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC13.6□□□□□ -0.23
CDX1P47902 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC13.6□□□□□ -0.23
CDX1P47902 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CDX1P47902 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC13.6□□□□□ -0.23
CDX1P47902 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC13.6□□□□□ -0.23
CDX1P47902 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CDX1P47902 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 AC133963.1-201ENST00000504166 1679 ntBASIC13.59□□□□□ -0.23
CDX1P47902 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 FUT8-AS1-201ENST00000621019 1521 ntBASIC13.59□□□□□ -0.23
CDX1P47902 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC13.59□□□□□ -0.23
CDX1P47902 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
CDX1P47902 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
CDX1P47902 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 AC068587.6-202ENST00000641839 5619 ntBASIC13.59□□□□□ -0.23
CDX1P47902 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
CDX1P47902 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 CICP14-201ENST00000629111 2732 ntBASIC13.59□□□□□ -0.23
CDX1P47902 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.59□□□□□ -0.23
CDX1P47902 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC13.59□□□□□ -0.23
CDX1P47902 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 INIP-202ENST00000374236 874 ntTSL 2 BASIC13.59□□□□□ -0.23
CDX1P47902 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 AL590627.1-203ENST00000421194 1026 ntBASIC13.59□□□□□ -0.23
CDX1P47902 RPS2P1-201ENST00000434010 821 ntBASIC13.59□□□□□ -0.23
CDX1P47902 HNRNPDP1-201ENST00000439535 754 ntBASIC13.59□□□□□ -0.23
CDX1P47902 SIGLEC30P-201ENST00000455569 941 ntBASIC13.59□□□□□ -0.23
CDX1P47902 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.59□□□□□ -0.23
CDX1P47902 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC13.59□□□□□ -0.23
CDX1P47902 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
CDX1P47902 AC025062.2-201ENST00000605477 670 ntBASIC13.59□□□□□ -0.23
CDX1P47902 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC13.59□□□□□ -0.23
CDX1P47902 AC107918.4-202ENST00000641623 219 ntBASIC13.59□□□□□ -0.23
CDX1P47902 HLA-J-201ENST00000462773 1622 ntBASIC13.59□□□□□ -0.23
CDX1P47902 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC13.59□□□□□ -0.23
CDX1P47902 AC079328.2-201ENST00000561241 3354 ntBASIC13.59□□□□□ -0.23
CDX1P47902 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC13.59□□□□□ -0.23
CDX1P47902 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC13.59□□□□□ -0.23
CDX1P47902 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.59□□□□□ -0.23
CDX1P47902 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDX1P47902 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC13.59□□□□□ -0.23
CDX1P47902 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CDX1P47902 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC13.58□□□□□ -0.23
CDX1P47902 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC13.58□□□□□ -0.23
CDX1P47902 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CDX1P47902 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CDX1P47902 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
CDX1P47902 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC13.58□□□□□ -0.23
CDX1P47902 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CDX1P47902 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.23
CDX1P47902 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.23
CDX1P47902 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC13.58□□□□□ -0.23
CDX1P47902 TNRC18P2-201ENST00000417666 2714 ntBASIC13.58□□□□□ -0.24
CDX1P47902 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
CDX1P47902 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CDX1P47902 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
CDX1P47902 AC132938.5-201ENST00000624980 1813 ntBASIC13.58□□□□□ -0.24
CDX1P47902 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CDX1P47902 AC060834.1-201ENST00000443027 2032 ntBASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms