Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SCN4AP35499 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SCN4AP35499 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SCN4AP35499 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SCN4AP35499 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SCN4AP35499 AC104457.1-201ENST00000401024 814 ntBASIC19.16■□□□□ 0.66
SCN4AP35499 AL591846.1-201ENST00000451736 433 ntBASIC19.16■□□□□ 0.66
SCN4AP35499 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC19.16■□□□□ 0.66
SCN4AP35499 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC19.16■□□□□ 0.66
SCN4AP35499 FXR1-221ENST00000491674 365 ntTSL 2 BASIC19.16■□□□□ 0.66
SCN4AP35499 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC19.16■□□□□ 0.66
SCN4AP35499 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC19.16■□□□□ 0.66
SCN4AP35499 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SCN4AP35499 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SCN4AP35499 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SCN4AP35499 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SCN4AP35499 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SCN4AP35499 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SCN4AP35499 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
SCN4AP35499 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN4AP35499 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN4AP35499 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN4AP35499 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN4AP35499 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.15■□□□□ 0.66
SCN4AP35499 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN4AP35499 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN4AP35499 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SCN4AP35499 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN4AP35499 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.15■□□□□ 0.66
SCN4AP35499 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN4AP35499 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SCN4AP35499 BTBD6P1-201ENST00000412176 1267 ntBASIC19.15■□□□□ 0.66
SCN4AP35499 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SCN4AP35499 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN4AP35499 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC19.15■□□□□ 0.66
SCN4AP35499 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC19.15■□□□□ 0.66
SCN4AP35499 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC19.15■□□□□ 0.66
SCN4AP35499 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SCN4AP35499 AP001063.1-201ENST00000568332 529 ntBASIC19.15■□□□□ 0.66
SCN4AP35499 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC19.15■□□□□ 0.66
SCN4AP35499 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC19.15■□□□□ 0.66
SCN4AP35499 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
SCN4AP35499 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN4AP35499 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SCN4AP35499 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC19.15■□□□□ 0.66
SCN4AP35499 AL031731.1-201ENST00000642131 2094 ntBASIC19.15■□□□□ 0.66
SCN4AP35499 AL354751.1-201ENST00000412768 1863 ntBASIC19.15■□□□□ 0.66
SCN4AP35499 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN4AP35499 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.14■□□□□ 0.66
SCN4AP35499 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
SCN4AP35499 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
SCN4AP35499 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SCN4AP35499 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SCN4AP35499 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC19.14■□□□□ 0.65
SCN4AP35499 FADS2-212ENST00000522639 360 ntTSL 5 BASIC19.14■□□□□ 0.65
SCN4AP35499 AC009486.1-201ENST00000569860 813 ntBASIC19.14■□□□□ 0.65
SCN4AP35499 FADS2-215ENST00000574708 385 ntTSL 3 BASIC19.14■□□□□ 0.65
SCN4AP35499 MIR3619-201ENST00000579667 83 ntBASIC19.14■□□□□ 0.65
SCN4AP35499 LINC02012-201ENST00000608206 1725 ntBASIC19.14■□□□□ 0.65
SCN4AP35499 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SCN4AP35499 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
SCN4AP35499 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SCN4AP35499 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC19.14■□□□□ 0.65
SCN4AP35499 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
SCN4AP35499 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SCN4AP35499 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC19.14■□□□□ 0.65
SCN4AP35499 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.14■□□□□ 0.65
SCN4AP35499 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
SCN4AP35499 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC19.14■□□□□ 0.65
SCN4AP35499 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC19.14■□□□□ 0.65
SCN4AP35499 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SCN4AP35499 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC19.14■□□□□ 0.65
SCN4AP35499 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.14■□□□□ 0.65
SCN4AP35499 AC097724.1-201ENST00000609581 426 ntBASIC19.14■□□□□ 0.65
SCN4AP35499 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC19.14■□□□□ 0.65
SCN4AP35499 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC19.14■□□□□ 0.65
SCN4AP35499 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC19.14■□□□□ 0.65
SCN4AP35499 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.13■□□□□ 0.65
SCN4AP35499 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
SCN4AP35499 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.13■□□□□ 0.65
SCN4AP35499 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.13■□□□□ 0.65
SCN4AP35499 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SCN4AP35499 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 RPS3-201ENST00000278572 907 ntTSL 3 BASIC19.13■□□□□ 0.65
SCN4AP35499 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SCN4AP35499 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms