Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC025678.2-201ENST00000562061 970 ntBASIC18.56■□□□□ 0.56
CIITAP33076 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC18.56■□□□□ 0.56
CIITAP33076 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CIITAP33076 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.56■□□□□ 0.56
CIITAP33076 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.56■□□□□ 0.56
CIITAP33076 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.56■□□□□ 0.56
CIITAP33076 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.56■□□□□ 0.56
CIITAP33076 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.56■□□□□ 0.56
CIITAP33076 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
CIITAP33076 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CIITAP33076 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.55■□□□□ 0.56
CIITAP33076 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.55■□□□□ 0.56
CIITAP33076 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
CIITAP33076 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CIITAP33076 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CIITAP33076 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.55■□□□□ 0.56
CIITAP33076 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CIITAP33076 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CIITAP33076 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CIITAP33076 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CIITAP33076 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CIITAP33076 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.55■□□□□ 0.56
CIITAP33076 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.55■□□□□ 0.56
CIITAP33076 AC004449.1-201ENST00000564240 433 ntBASIC18.55■□□□□ 0.56
CIITAP33076 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.55■□□□□ 0.56
CIITAP33076 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CIITAP33076 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.55■□□□□ 0.56
CIITAP33076 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CIITAP33076 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CIITAP33076 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CIITAP33076 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
CIITAP33076 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
CIITAP33076 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CIITAP33076 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.55■□□□□ 0.56
CIITAP33076 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.55■□□□□ 0.56
CIITAP33076 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CIITAP33076 U82695.1-201ENST00000635752 1889 ntBASIC18.54■□□□□ 0.56
CIITAP33076 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CIITAP33076 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.54■□□□□ 0.56
CIITAP33076 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CIITAP33076 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CIITAP33076 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC18.54■□□□□ 0.56
CIITAP33076 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CIITAP33076 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CIITAP33076 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CIITAP33076 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.54■□□□□ 0.56
CIITAP33076 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
CIITAP33076 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CIITAP33076 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CIITAP33076 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CIITAP33076 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CIITAP33076 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.54■□□□□ 0.56
CIITAP33076 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CIITAP33076 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.54■□□□□ 0.56
CIITAP33076 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.54■□□□□ 0.56
CIITAP33076 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.54■□□□□ 0.56
CIITAP33076 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.54■□□□□ 0.56
CIITAP33076 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CIITAP33076 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.54■□□□□ 0.56
CIITAP33076 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.54■□□□□ 0.56
CIITAP33076 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18.54■□□□□ 0.56
CIITAP33076 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.54■□□□□ 0.56
CIITAP33076 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CIITAP33076 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CIITAP33076 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.54■□□□□ 0.56
CIITAP33076 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CIITAP33076 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CIITAP33076 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC18.54■□□□□ 0.56
CIITAP33076 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CIITAP33076 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
CIITAP33076 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.53■□□□□ 0.56
CIITAP33076 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CIITAP33076 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CIITAP33076 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CIITAP33076 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CIITAP33076 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CIITAP33076 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CIITAP33076 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CIITAP33076 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CIITAP33076 AL645939.2-201ENST00000427340 991 ntBASIC18.53■□□□□ 0.56
CIITAP33076 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18.53■□□□□ 0.56
CIITAP33076 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18.53■□□□□ 0.56
CIITAP33076 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.53■□□□□ 0.56
CIITAP33076 AC061975.2-201ENST00000581722 295 ntBASIC18.53■□□□□ 0.56
CIITAP33076 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CIITAP33076 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CIITAP33076 Z92544.3-201ENST00000624747 417 ntBASIC18.53■□□□□ 0.56
CIITAP33076 AC005052.1-201ENST00000625181 2492 ntBASIC18.53■□□□□ 0.56
CIITAP33076 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CIITAP33076 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CIITAP33076 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CIITAP33076 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CIITAP33076 AL592424.1-201ENST00000563624 1536 ntBASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms