Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC14.41□□□□□ -0.1
COL8A1P27658 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
COL8A1P27658 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC14.41□□□□□ -0.1
COL8A1P27658 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 AC073592.3-201ENST00000625118 1834 ntBASIC14.41□□□□□ -0.1
COL8A1P27658 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
COL8A1P27658 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL8A1P27658 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL8A1P27658 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC14.4□□□□□ -0.1
COL8A1P27658 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL8A1P27658 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL8A1P27658 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL8A1P27658 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL8A1P27658 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.4□□□□□ -0.1
COL8A1P27658 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC14.4□□□□□ -0.1
COL8A1P27658 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC14.4□□□□□ -0.1
COL8A1P27658 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC14.4□□□□□ -0.1
COL8A1P27658 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL8A1P27658 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL8A1P27658 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL8A1P27658 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL8A1P27658 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL8A1P27658 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL8A1P27658 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL8A1P27658 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL8A1P27658 AC005229.1-201ENST00000392885 409 ntBASIC14.4□□□□□ -0.1
COL8A1P27658 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.4□□□□□ -0.1
COL8A1P27658 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.4□□□□□ -0.1
COL8A1P27658 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.4□□□□□ -0.1
COL8A1P27658 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.4□□□□□ -0.1
COL8A1P27658 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.4□□□□□ -0.1
COL8A1P27658 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC14.4□□□□□ -0.1
COL8A1P27658 AL589987.1-201ENST00000453380 819 ntBASIC14.4□□□□□ -0.1
COL8A1P27658 CTBP2P5-201ENST00000454986 1264 ntBASIC14.4□□□□□ -0.1
COL8A1P27658 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL8A1P27658 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC14.4□□□□□ -0.1
COL8A1P27658 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.4□□□□□ -0.1
COL8A1P27658 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
COL8A1P27658 RHOQP1-201ENST00000555758 579 ntBASIC14.4□□□□□ -0.1
COL8A1P27658 MIR3615-201ENST00000581999 87 ntBASIC14.4□□□□□ -0.1
COL8A1P27658 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL8A1P27658 SRD5A3P1-201ENST00000603021 949 ntBASIC14.4□□□□□ -0.1
COL8A1P27658 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.4□□□□□ -0.1
COL8A1P27658 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC14.4□□□□□ -0.1
COL8A1P27658 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
COL8A1P27658 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL8A1P27658 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.4□□□□□ -0.1
COL8A1P27658 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL8A1P27658 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL8A1P27658 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL8A1P27658 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC14.4□□□□□ -0.1
COL8A1P27658 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC14.4□□□□□ -0.1
COL8A1P27658 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
COL8A1P27658 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC14.39□□□□□ -0.11
COL8A1P27658 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC14.39□□□□□ -0.11
COL8A1P27658 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
COL8A1P27658 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC14.39□□□□□ -0.11
COL8A1P27658 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
COL8A1P27658 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
COL8A1P27658 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
COL8A1P27658 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.39□□□□□ -0.11
COL8A1P27658 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC14.39□□□□□ -0.11
COL8A1P27658 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 KRT18P34-201ENST00000488218 1270 ntBASIC14.39□□□□□ -0.11
COL8A1P27658 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.39□□□□□ -0.11
COL8A1P27658 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC14.39□□□□□ -0.11
COL8A1P27658 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.39□□□□□ -0.11
COL8A1P27658 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.39□□□□□ -0.11
COL8A1P27658 MIR3909-201ENST00000579518 119 ntBASIC14.39□□□□□ -0.11
COL8A1P27658 RN7SL190P-201ENST00000582519 257 ntBASIC14.39□□□□□ -0.11
COL8A1P27658 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.39□□□□□ -0.11
COL8A1P27658 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.39□□□□□ -0.11
COL8A1P27658 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 LINC00896-202ENST00000609602 2128 ntBASIC14.39□□□□□ -0.11
COL8A1P27658 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL8A1P27658 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
COL8A1P27658 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
COL8A1P27658 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms