Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC20.44■□□□□ 0.86
COL5A3P25940 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC20.44■□□□□ 0.86
COL5A3P25940 AL022328.1-201ENST00000610050 478 ntBASIC20.44■□□□□ 0.86
COL5A3P25940 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC20.44■□□□□ 0.86
COL5A3P25940 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A3P25940 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A3P25940 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A3P25940 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
COL5A3P25940 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL5A3P25940 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC20.43■□□□□ 0.86
COL5A3P25940 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL5A3P25940 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL5A3P25940 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL5A3P25940 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC20.43■□□□□ 0.86
COL5A3P25940 APOA1-205ENST00000375329 927 ntTSL 2 BASIC20.43■□□□□ 0.86
COL5A3P25940 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
COL5A3P25940 SOCS2P1-201ENST00000417727 557 ntBASIC20.43■□□□□ 0.86
COL5A3P25940 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC20.43■□□□□ 0.86
COL5A3P25940 KLF2P4-201ENST00000451959 1225 ntBASIC20.43■□□□□ 0.86
COL5A3P25940 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC20.43■□□□□ 0.86
COL5A3P25940 FAM86LP-201ENST00000478302 853 ntBASIC20.43■□□□□ 0.86
COL5A3P25940 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC20.43■□□□□ 0.86
COL5A3P25940 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC20.43■□□□□ 0.86
COL5A3P25940 IGHV3OR16-16-201ENST00000563644 343 ntBASIC20.43■□□□□ 0.86
COL5A3P25940 AC120045.2-201ENST00000567334 178 ntBASIC20.43■□□□□ 0.86
COL5A3P25940 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC20.43■□□□□ 0.86
COL5A3P25940 AC244669.2-201ENST00000612320 853 ntBASIC20.43■□□□□ 0.86
COL5A3P25940 AC009542.2-202ENST00000619004 1067 ntBASIC20.43■□□□□ 0.86
COL5A3P25940 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL5A3P25940 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL5A3P25940 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
COL5A3P25940 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC20.43■□□□□ 0.86
COL5A3P25940 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL5A3P25940 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC20.43■□□□□ 0.86
COL5A3P25940 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL5A3P25940 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
COL5A3P25940 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A3P25940 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A3P25940 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A3P25940 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A3P25940 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A3P25940 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A3P25940 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
COL5A3P25940 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC20.42■□□□□ 0.86
COL5A3P25940 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A3P25940 HNRNPA1P13-201ENST00000510646 963 ntBASIC20.42■□□□□ 0.86
COL5A3P25940 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
COL5A3P25940 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC20.42■□□□□ 0.86
COL5A3P25940 TIMM17BP1-201ENST00000545713 516 ntBASIC20.42■□□□□ 0.86
COL5A3P25940 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC20.42■□□□□ 0.86
COL5A3P25940 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC20.42■□□□□ 0.86
COL5A3P25940 MIR6869-201ENST00000619434 62 ntBASIC20.42■□□□□ 0.86
COL5A3P25940 PFAS-212ENST00000625942 396 ntTSL 5 BASIC20.42■□□□□ 0.86
COL5A3P25940 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC20.42■□□□□ 0.86
COL5A3P25940 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A3P25940 AC005622.1-201ENST00000636801 1703 ntBASIC20.42■□□□□ 0.86
COL5A3P25940 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A3P25940 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A3P25940 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
COL5A3P25940 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
COL5A3P25940 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A3P25940 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A3P25940 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A3P25940 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
COL5A3P25940 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A3P25940 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A3P25940 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A3P25940 FAM21FP-201ENST00000426241 1131 ntBASIC20.41■□□□□ 0.86
COL5A3P25940 ACTBP11-201ENST00000436287 1126 ntBASIC20.41■□□□□ 0.86
COL5A3P25940 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC20.41■□□□□ 0.86
COL5A3P25940 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
COL5A3P25940 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC20.41■□□□□ 0.86
COL5A3P25940 DERL2-202ENST00000570848 657 ntTSL 5 BASIC20.41■□□□□ 0.86
COL5A3P25940 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC20.41■□□□□ 0.86
COL5A3P25940 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC20.41■□□□□ 0.86
COL5A3P25940 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
COL5A3P25940 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
COL5A3P25940 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC20.41■□□□□ 0.86
COL5A3P25940 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC20.41■□□□□ 0.86
COL5A3P25940 AC020907.1-201ENST00000616460 1350 ntBASIC20.41■□□□□ 0.86
COL5A3P25940 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.41■□□□□ 0.86
COL5A3P25940 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC20.41■□□□□ 0.86
COL5A3P25940 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC20.41■□□□□ 0.86
COL5A3P25940 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
COL5A3P25940 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A3P25940 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
COL5A3P25940 FXR1-221ENST00000491674 365 ntTSL 2 BASIC20.41■□□□□ 0.86
COL5A3P25940 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC20.41■□□□□ 0.86
COL5A3P25940 SLC25A47P1-201ENST00000531577 414 ntBASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms