Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DOAP06340 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
HLA-DOAP06340 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC19.39■□□□□ 0.69
HLA-DOAP06340 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC19.39■□□□□ 0.69
HLA-DOAP06340 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
HLA-DOAP06340 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19.39■□□□□ 0.69
HLA-DOAP06340 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC19.39■□□□□ 0.69
HLA-DOAP06340 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DOAP06340 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
HLA-DOAP06340 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC19.39■□□□□ 0.69
HLA-DOAP06340 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DOAP06340 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DOAP06340 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DOAP06340 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DOAP06340 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC19.39■□□□□ 0.69
HLA-DOAP06340 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DOAP06340 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DOAP06340 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.39■□□□□ 0.69
HLA-DOAP06340 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
HLA-DOAP06340 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
HLA-DOAP06340 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.39■□□□□ 0.69
HLA-DOAP06340 AC105020.1-201ENST00000435356 2205 ntBASIC19.39■□□□□ 0.69
HLA-DOAP06340 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DOAP06340 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DOAP06340 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DOAP06340 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DOAP06340 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DOAP06340 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DOAP06340 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.39■□□□□ 0.69
HLA-DOAP06340 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 RPL37AP1-201ENST00000412502 279 ntBASIC19.38■□□□□ 0.69
HLA-DOAP06340 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC19.38■□□□□ 0.69
HLA-DOAP06340 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DOAP06340 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.37■□□□□ 0.69
HLA-DOAP06340 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DOAP06340 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DOAP06340 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
HLA-DOAP06340 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DOAP06340 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DOAP06340 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC19.37■□□□□ 0.69
HLA-DOAP06340 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DOAP06340 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC19.37■□□□□ 0.69
HLA-DOAP06340 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC19.37■□□□□ 0.69
HLA-DOAP06340 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DOAP06340 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.37■□□□□ 0.69
HLA-DOAP06340 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DOAP06340 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.37■□□□□ 0.69
HLA-DOAP06340 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
HLA-DOAP06340 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DOAP06340 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DOAP06340 AC087499.5-201ENST00000452760 1342 ntBASIC19.37■□□□□ 0.69
HLA-DOAP06340 SERBP1P5-201ENST00000510079 1181 ntBASIC19.37■□□□□ 0.69
HLA-DOAP06340 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC19.37■□□□□ 0.69
HLA-DOAP06340 AL079307.3-201ENST00000556114 283 ntBASIC19.37■□□□□ 0.69
HLA-DOAP06340 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC19.37■□□□□ 0.69
HLA-DOAP06340 NAA38-207ENST00000576861 556 ntTSL 3 BASIC19.37■□□□□ 0.69
HLA-DOAP06340 AC026979.3-201ENST00000607315 403 ntBASIC19.37■□□□□ 0.69
HLA-DOAP06340 AL133215.2-201ENST00000609242 977 ntBASIC19.37■□□□□ 0.69
HLA-DOAP06340 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DOAP06340 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DOAP06340 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DOAP06340 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms