Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.07■□□□□ 0.16
LDLRP01130 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LDLRP01130 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.07■□□□□ 0.16
LDLRP01130 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LDLRP01130 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LDLRP01130 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.07■□□□□ 0.16
LDLRP01130 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
LDLRP01130 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.06■□□□□ 0.16
LDLRP01130 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.06■□□□□ 0.16
LDLRP01130 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.06■□□□□ 0.16
LDLRP01130 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
LDLRP01130 AL356309.3-201ENST00000624132 1934 ntBASIC16.06■□□□□ 0.16
LDLRP01130 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.06■□□□□ 0.16
LDLRP01130 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
LDLRP01130 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
LDLRP01130 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.06■□□□□ 0.16
LDLRP01130 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.06■□□□□ 0.16
LDLRP01130 METTL21AP1-201ENST00000438852 635 ntBASIC16.06■□□□□ 0.16
LDLRP01130 ABCD1P5-201ENST00000445663 754 ntBASIC16.06■□□□□ 0.16
LDLRP01130 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.06■□□□□ 0.16
LDLRP01130 CYMP-203ENST00000474680 1263 ntBASIC16.06■□□□□ 0.16
LDLRP01130 UNC93B6-202ENST00000528242 690 ntBASIC16.06■□□□□ 0.16
LDLRP01130 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.06■□□□□ 0.16
LDLRP01130 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
LDLRP01130 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.06■□□□□ 0.16
LDLRP01130 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
LDLRP01130 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
LDLRP01130 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LDLRP01130 AL391256.1-201ENST00000443260 1855 ntBASIC16.05■□□□□ 0.16
LDLRP01130 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
LDLRP01130 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.05■□□□□ 0.16
LDLRP01130 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.05■□□□□ 0.16
LDLRP01130 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.05■□□□□ 0.16
LDLRP01130 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
LDLRP01130 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.05■□□□□ 0.16
LDLRP01130 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LDLRP01130 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.05■□□□□ 0.16
LDLRP01130 HTR5BP-201ENST00000430851 1154 ntBASIC16.05■□□□□ 0.16
LDLRP01130 AC007967.2-201ENST00000432613 625 ntBASIC16.05■□□□□ 0.16
LDLRP01130 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.05■□□□□ 0.16
LDLRP01130 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.05■□□□□ 0.16
LDLRP01130 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.05■□□□□ 0.16
LDLRP01130 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC16.05■□□□□ 0.16
LDLRP01130 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
LDLRP01130 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.05■□□□□ 0.16
LDLRP01130 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
LDLRP01130 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LDLRP01130 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
LDLRP01130 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
LDLRP01130 AC068587.6-202ENST00000641839 5619 ntBASIC16.05■□□□□ 0.16
LDLRP01130 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
LDLRP01130 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDLRP01130 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDLRP01130 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.04■□□□□ 0.16
LDLRP01130 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDLRP01130 MTHFR-217ENST00000641820 1569 ntBASIC16.04■□□□□ 0.16
LDLRP01130 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDLRP01130 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.04■□□□□ 0.16
LDLRP01130 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.04■□□□□ 0.16
LDLRP01130 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDLRP01130 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDLRP01130 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.04■□□□□ 0.16
LDLRP01130 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms