Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.89■□□□□ 0.13
SEMA3DO95025 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
SEMA3DO95025 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.89■□□□□ 0.13
SEMA3DO95025 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.89■□□□□ 0.13
SEMA3DO95025 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
SEMA3DO95025 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 CYP2T1P-202ENST00000641596 2535 ntBASIC15.89■□□□□ 0.13
SEMA3DO95025 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.89■□□□□ 0.13
SEMA3DO95025 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.89■□□□□ 0.13
SEMA3DO95025 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.89■□□□□ 0.13
SEMA3DO95025 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.89■□□□□ 0.13
SEMA3DO95025 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.89■□□□□ 0.13
SEMA3DO95025 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.89■□□□□ 0.13
SEMA3DO95025 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.89■□□□□ 0.13
SEMA3DO95025 AC020765.3-201ENST00000613051 740 ntBASIC15.89■□□□□ 0.13
SEMA3DO95025 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.89■□□□□ 0.13
SEMA3DO95025 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.89■□□□□ 0.13
SEMA3DO95025 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.89■□□□□ 0.13
SEMA3DO95025 TSPY26P-202ENST00000565928 3884 ntBASIC15.89■□□□□ 0.13
SEMA3DO95025 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.89■□□□□ 0.13
SEMA3DO95025 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.89■□□□□ 0.13
SEMA3DO95025 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.89■□□□□ 0.13
SEMA3DO95025 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.89■□□□□ 0.13
SEMA3DO95025 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SEMA3DO95025 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.89■□□□□ 0.13
SEMA3DO95025 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.89■□□□□ 0.13
SEMA3DO95025 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.88■□□□□ 0.13
SEMA3DO95025 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
SEMA3DO95025 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
SEMA3DO95025 AC006449.5-201ENST00000610658 2098 ntBASIC15.88■□□□□ 0.13
SEMA3DO95025 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
SEMA3DO95025 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
SEMA3DO95025 ALOX12P2-203ENST00000570921 1945 ntBASIC15.88■□□□□ 0.13
SEMA3DO95025 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.88■□□□□ 0.13
SEMA3DO95025 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.88■□□□□ 0.13
SEMA3DO95025 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 RNU1-129P-201ENST00000384064 167 ntBASIC15.88■□□□□ 0.13
SEMA3DO95025 HMGA1P7-201ENST00000406908 502 ntBASIC15.88■□□□□ 0.13
SEMA3DO95025 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
SEMA3DO95025 RHOQP3-201ENST00000437982 621 ntBASIC15.88■□□□□ 0.13
SEMA3DO95025 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
SEMA3DO95025 AL513480.1-201ENST00000451731 511 ntBASIC15.88■□□□□ 0.13
SEMA3DO95025 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC15.88■□□□□ 0.13
SEMA3DO95025 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.88■□□□□ 0.13
SEMA3DO95025 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.88■□□□□ 0.13
SEMA3DO95025 U1.21-201ENST00000580816 167 ntBASIC15.88■□□□□ 0.13
SEMA3DO95025 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 AC021097.1-201ENST00000607902 574 ntBASIC15.88■□□□□ 0.13
SEMA3DO95025 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.88■□□□□ 0.13
SEMA3DO95025 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
SEMA3DO95025 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
SEMA3DO95025 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.88■□□□□ 0.13
SEMA3DO95025 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.88■□□□□ 0.13
SEMA3DO95025 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.88■□□□□ 0.13
SEMA3DO95025 LINC01144-201ENST00000626198 1710 ntBASIC15.88■□□□□ 0.13
SEMA3DO95025 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
SEMA3DO95025 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.88■□□□□ 0.13
SEMA3DO95025 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.88■□□□□ 0.13
SEMA3DO95025 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.88■□□□□ 0.13
SEMA3DO95025 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SEMA3DO95025 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
SEMA3DO95025 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
SEMA3DO95025 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms