Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
MSH4O15457 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSH4O15457 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSH4O15457 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSH4O15457 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSH4O15457 HNRNPFP1-201ENST00000391730 1133 ntBASIC18.5■□□□□ 0.55
MSH4O15457 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.5■□□□□ 0.55
MSH4O15457 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.5■□□□□ 0.55
MSH4O15457 POU5F1P6-201ENST00000466990 990 ntBASIC18.5■□□□□ 0.55
MSH4O15457 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.5■□□□□ 0.55
MSH4O15457 Z92544.3-201ENST00000624747 417 ntBASIC18.5■□□□□ 0.55
MSH4O15457 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSH4O15457 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
MSH4O15457 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.5■□□□□ 0.55
MSH4O15457 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSH4O15457 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.5■□□□□ 0.55
MSH4O15457 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.49■□□□□ 0.55
MSH4O15457 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.49■□□□□ 0.55
MSH4O15457 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC18.49■□□□□ 0.55
MSH4O15457 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH4O15457 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.49■□□□□ 0.55
MSH4O15457 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC18.49■□□□□ 0.55
MSH4O15457 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
MSH4O15457 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH4O15457 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH4O15457 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
MSH4O15457 FAM220BP-201ENST00000377689 816 ntBASIC18.49■□□□□ 0.55
MSH4O15457 AL645939.2-201ENST00000427340 991 ntBASIC18.49■□□□□ 0.55
MSH4O15457 AC069262.1-201ENST00000539058 672 ntBASIC18.49■□□□□ 0.55
MSH4O15457 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18.49■□□□□ 0.55
MSH4O15457 AC025678.2-201ENST00000562061 970 ntBASIC18.49■□□□□ 0.55
MSH4O15457 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.49■□□□□ 0.55
MSH4O15457 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH4O15457 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.49■□□□□ 0.55
MSH4O15457 AC008677.1-201ENST00000519230 1561 ntBASIC18.49■□□□□ 0.55
MSH4O15457 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH4O15457 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC18.49■□□□□ 0.55
MSH4O15457 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH4O15457 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH4O15457 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.49■□□□□ 0.55
MSH4O15457 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH4O15457 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MSH4O15457 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
MSH4O15457 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
MSH4O15457 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.48■□□□□ 0.55
MSH4O15457 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.48■□□□□ 0.55
MSH4O15457 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.48■□□□□ 0.55
MSH4O15457 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.48■□□□□ 0.55
MSH4O15457 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.48■□□□□ 0.55
MSH4O15457 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.48■□□□□ 0.55
MSH4O15457 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.48■□□□□ 0.55
MSH4O15457 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18.48■□□□□ 0.55
MSH4O15457 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.48■□□□□ 0.55
MSH4O15457 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
MSH4O15457 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.48■□□□□ 0.55
MSH4O15457 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
MSH4O15457 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC18.48■□□□□ 0.55
MSH4O15457 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MSH4O15457 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.48■□□□□ 0.55
MSH4O15457 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
MSH4O15457 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.47■□□□□ 0.55
MSH4O15457 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.47■□□□□ 0.55
MSH4O15457 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.47■□□□□ 0.55
MSH4O15457 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
MSH4O15457 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.47■□□□□ 0.55
MSH4O15457 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.47■□□□□ 0.55
MSH4O15457 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
MSH4O15457 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
MSH4O15457 HLA-H-201ENST00000383620 1096 ntBASIC18.47■□□□□ 0.55
MSH4O15457 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.47■□□□□ 0.55
MSH4O15457 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.47■□□□□ 0.55
MSH4O15457 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.47■□□□□ 0.55
MSH4O15457 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms